BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0014.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K534.1 B3K534_9BACI GCN5-related N-acetyltransferase 164 3e-39 C2PRL9.1 C2PRL9_BACCE Ribosomal-protein-alanine acetyltransferase 130 5e-29 Q5WIQ1.1 Q5WIQ1_BACSK Ribosomal-protein-alanine acetyltransferas... 129 1e-28 C3A4K0.1 C3A4K0_BACMY Ribosomal-protein-alanine acetyltransferase 129 1e-28 C2SIN7.1 C2SIN7_BACCE Ribosomal-protein-alanine acetyltransferase 129 1e-28 >B3K534.1 B3K534_9BACI GCN5-related N-acetyltransferase Length = 187 Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 121/181 (66%), Gaps = 1/181 (0%) Query: 1 VYVSGGVIPDLPGKKVKLRPLEAGHAAALYSVWSHPQVNRWLAAPLLSSPEEAEQLIAVL 60 +Y G++P + G++++LR +E A A+ WS P V +L P++ S E+A+ LI L Sbjct: 1 MYRCEGIVPGMKGRRIRLRRMEREDAEAMLGCWSDPAVTAFLDMPVMDSAEDAKALIEWL 60 Query: 61 LQMSREEESLRWSI-IGPEGGVIGSCGYNSWQLQGAYRGEIGCELLPDYWGLGYMREALE 119 +++ ++E++RW I I G +IGSCG+N WQL+GA++GE GCEL YWG GYM EA E Sbjct: 61 QRLAEQDEAIRWGIEITETGQLIGSCGFNIWQLEGAFKGEFGCELASGYWGKGYMTEAAE 120 Query: 120 LLLDYGFAVMGLNRIEAFCHPDNLRAQRLFQSLGFQREGLLREYRHTDAGFQDVVLYALL 179 L+ +G+A MGLNRIEAF N RA R F G+ REG+LR+YR T G+ D V+++ L Sbjct: 121 LVAAFGYASMGLNRIEAFVDSRNERACRWFAKNGYMREGVLRDYRLTSGGYVDAVVFSRL 180 Query: 180 R 180 R Sbjct: 181 R 181 >C2PRL9.1 C2PRL9_BACCE Ribosomal-protein-alanine acetyltransferase Length = 181 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 7 VIPDLPGKKVKLRPLEAGHAAALYSVWSHPQVNRWLAAPLLSSPEEAEQLIAVLLQMSRE 66 +I +L +++ LR ++ +A+++++WS P+V +++ + +A +I +L ++SRE Sbjct: 6 LITELQTERLVLRKMKVSDSASMFTIWSDPEVTKFMNINSFTDESQAVDMIEMLDKLSRE 65 Query: 67 EESLRWSIIGPEGG-VIGSCGYNSWQLQGAYRGEIGCELLPDYWGLGYMREALELLLDYG 125 ++R+SII E +IGSCGYNS+ + A + EIG ++ +WG GY EA+ L+DY Sbjct: 66 NRAIRYSIIELESNEIIGSCGYNSFDFKNA-KAEIGYDISKAFWGKGYAPEAILSLMDYA 124 Query: 126 FAVMGLNRIEAFCHPDNLRAQRLFQSLGFQREGLLREYRHTDAGFQDVVLYALL 179 F+ + NRIEA +N+ + ++ Q L F EG +R+ ++ F D+ +Y+ L Sbjct: 125 FSTLEFNRIEAKVESENINSIKVLQKLNFTFEGTMRKCEKSNEKFIDLSIYSKL 178 >Q5WIQ1.1 Q5WIQ1_BACSK Ribosomal-protein-alanine acetyltransferase EC=2.3.1.128 Length = 177 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 11 LPGKKVKLRPLEAGHAAALYSVWSHPQVNRWLAAPLLSSPEEAEQLIAVLLQMSREEESL 70 L ++ LR L A L+++WS P V +++ L+ +AE +I + Q+S+E++ Sbjct: 4 LKTNRLYLRELADKDAPELFTIWSTPAVTKFMNIIPLTDVTQAEDIIQMFAQLSKEKKGN 63 Query: 71 RWSIIGPE-GGVIGSCGYNSWQLQGAYRGEIGCELLPDYWGLGYMREALELLLDYGFAVM 129 R+SI E G +IG+CG+N RGEIG EL YWG GYM+EAL LL+ GFA Sbjct: 64 RYSIFLAETGDLIGTCGFNQLDADND-RGEIGYELGEPYWGHGYMKEALMKLLEVGFASF 122 Query: 130 GLNRIEAFCHPDNLRAQRLFQSLGFQREGLLREYRHTDAGFQDVVLYALLR 180 LNRIEA P+N + L + +GFQ EGLLR+Y + D+ L++LL+ Sbjct: 123 ALNRIEAKVEPENSASIGLLEKIGFQNEGLLRQYEKAKGRYIDLYLFSLLK 173 >C3A4K0.1 C3A4K0_BACMY Ribosomal-protein-alanine acetyltransferase Length = 181 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 7 VIPDLPGKKVKLRPLEAGHAAALYSVWSHPQVNRWLAAPLLSSPEEAEQLIAVLLQMSRE 66 +I +L +++ LR ++ +A+++++W+ P+V +++ + +A +I +L ++SRE Sbjct: 6 LITELQTERLVLRKMKVSDSASMFTIWADPEVTKFMNINSFTDESQAVDMIEMLDKLSRE 65 Query: 67 EESLRWSIIGPEGG-VIGSCGYNSWQLQGAYRGEIGCELLPDYWGLGYMREALELLLDYG 125 ++R+SII E +IGSCGYNS+ + A + EIG ++ +WG GY EA+ L+DY Sbjct: 66 NRAIRYSIIELESNEIIGSCGYNSFDFKNA-KAEIGYDISKAFWGKGYAPEAILSLMDYA 124 Query: 126 FAVMGLNRIEAFCHPDNLRAQRLFQSLGFQREGLLREYRHTDAGFQDVVLYALL 179 F+ + NRIEA +N+ + ++ Q L F EG +R+ ++ F D+ +Y+ L Sbjct: 125 FSTLEFNRIEAKVESENINSIKVLQKLNFTFEGTMRKCEKSNEKFIDLSIYSKL 178 >C2SIN7.1 C2SIN7_BACCE Ribosomal-protein-alanine acetyltransferase Length = 181 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 107/174 (61%), Gaps = 2/174 (1%) Query: 7 VIPDLPGKKVKLRPLEAGHAAALYSVWSHPQVNRWLAAPLLSSPEEAEQLIAVLLQMSRE 66 +I +L +++ LR ++ +A+++++W+ P+V +++ + +A +I +L ++SRE Sbjct: 6 LITELQTERLVLRKMKVSDSASMFTIWADPEVTKFMNINSFTDESQAVDMIEMLDKLSRE 65 Query: 67 EESLRWSIIGPEGG-VIGSCGYNSWQLQGAYRGEIGCELLPDYWGLGYMREALELLLDYG 125 ++R+SII E +IGSCGYNS+ + A + EIG ++ +WG GY EA+ L+DY Sbjct: 66 NRAIRYSIIELESNEIIGSCGYNSFDFKNA-KAEIGYDISKAFWGKGYAPEAILSLMDYA 124 Query: 126 FAVMGLNRIEAFCHPDNLRAQRLFQSLGFQREGLLREYRHTDAGFQDVVLYALL 179 F+ + NRIEA +N+ + ++ Q L F EG +R+ ++ F D+ +Y+ L Sbjct: 125 FSTLEFNRIEAKVESENINSIKVLQKLNFTFEGTMRKCEKSNEKFIDLSIYSKL 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.141 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,200,793,461 Number of extensions: 49500561 Number of successful extensions: 113425 Number of sequences better than 1.0e-05: 1568 Number of HSP's gapped: 113340 Number of HSP's successfully gapped: 1568 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)