BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0013.p (376 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K538.1 B3K538_9BACI Drug resistance transporter, EmrB/QacA sub... 347 8e-94 A8W034.1 A8W034_9BACI Arabinose efflux permease-like protein 286 2e-75 C1TJB9.1 C1TJB9_9FIRM Arabinose efflux permease family protein 278 4e-73 C4CJX8.1 C4CJX8_9CHLR Drug resistance transporter, EmrB/QacA sub... 269 3e-70 C0Z997.1 C0Z997_BREBN Putative multidrug resistance protein 262 5e-68 >B3K538.1 B3K538_9BACI Drug resistance transporter, EmrB/QacA subfamily Length = 504 Score = 347 bits (891), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 177/305 (58%), Positives = 215/305 (70%), Gaps = 1/305 (0%) Query: 1 LTGVLLATFLAAIEGTVTGPAGPAIVGDFQGMQWLSWIFTAYLLAMAVTTPIFGKLSDLM 60 L G+LL+TF+AAIEGTV GPAGPAI+ F + +SWIFTAYLL MAVTTPIFGK+SDL Sbjct: 13 LVGILLSTFMAAIEGTVVGPAGPAIISSFGSVSLMSWIFTAYLLTMAVTTPIFGKISDLY 72 Query: 61 GRKPVFIGGVAVFLLGSLLCGVAQSMEQLIVFRGLQGIGAGALIPMTFTIIGDIYSIQER 120 GRKPVF+ G +FL+GSLLCG++Q+M QLI+FR +QGIGAGA+IP+TFTI+GDIY+++ER Sbjct: 73 GRKPVFLYGSLIFLVGSLLCGLSQNMTQLIIFRAIQGIGAGAVIPVTFTIVGDIYNLEER 132 Query: 121 AKTQGLLSSVWGISSLVGPLLGGYVVDYLSWRWVFVFNLPFGLLSIVFISRFLKEENVRR 180 K QG++SSVWGISSL+GPLLGGY VDYLSW W+FVFN+PFGLLSI I R+ KEE R Sbjct: 133 GKIQGMISSVWGISSLIGPLLGGYFVDYLSWHWIFVFNVPFGLLSIWLIFRYFKEERNAR 192 Query: 181 KAKLDLPGVXXXXX-XXXXXXXXXXXXXQNLPWTSPXXXXXXXXXXXXXXIFWRVERRAS 239 + +D G ++ W SP F VE R Sbjct: 193 EVSIDYGGAALFTVGMTALLFALAVGGGESYSWNSPFMLGLMIGSVVLLAAFLVVENRVK 252 Query: 240 EPMLPLGLFSIRNITVSTGANLLVSTLIIGLTTYVPLWVQGVXXXXXXXXXXXXXPMSVG 299 EPMLPL LF IR+ITVST AN+LVS LIIGLTTY+PLW+QGV PMS+G Sbjct: 253 EPMLPLHLFKIRDITVSTIANILVSALIIGLTTYLPLWIQGVRGGNATLSGLTLAPMSIG 312 Query: 300 WVLGS 304 W++GS Sbjct: 313 WLIGS 317 >A8W034.1 A8W034_9BACI Arabinose efflux permease-like protein Length = 465 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/305 (45%), Positives = 197/305 (64%) Query: 1 LTGVLLATFLAAIEGTVTGPAGPAIVGDFQGMQWLSWIFTAYLLAMAVTTPIFGKLSDLM 60 + +L+ATFLAA+E TV A P+I D GM +SW+F AYLL AV TPIFGKL+DL Sbjct: 9 IVALLIATFLAAVEVTVISTAMPSITSDLGGMDKISWVFAAYLLTYAVMTPIFGKLADLF 68 Query: 61 GRKPVFIGGVAVFLLGSLLCGVAQSMEQLIVFRGLQGIGAGALIPMTFTIIGDIYSIQER 120 GRK VFIGGV+VFLLGS+LCG +QSMEQLI FR +QGIGAGAL PMTFTI+GD++ ++R Sbjct: 69 GRKRVFIGGVSVFLLGSVLCGFSQSMEQLIFFRAIQGIGAGALTPMTFTIVGDVFQYEQR 128 Query: 121 AKTQGLLSSVWGISSLVGPLLGGYVVDYLSWRWVFVFNLPFGLLSIVFISRFLKEENVRR 180 AK Q ++ S+WG++ + GPL+GG+ VD+L+W W+F N+PFGL+++ + R L+E+ ++ Sbjct: 129 AKAQAIIGSIWGVAGIFGPLVGGFFVDFLTWHWIFFINVPFGLVAMHLVGRHLQEQIEKK 188 Query: 181 KAKLDLPGVXXXXXXXXXXXXXXXXXXQNLPWTSPXXXXXXXXXXXXXXIFWRVERRASE 240 K ++D G ++ WT P +F R++ R +E Sbjct: 189 KRRIDYKGALTFIIGTGALLYALLSGGTDIAWTDPLMYSLFLIAGLFLVLFVRIQIRTAE 248 Query: 241 PMLPLGLFSIRNITVSTGANLLVSTLIIGLTTYVPLWVQGVXXXXXXXXXXXXXPMSVGW 300 PM+PL L +++ + A+L++ ++IGLT Y+PLWVQGV PMS+GW Sbjct: 249 PMVPLHLLKNQHLLTANLASLMLGMILIGLTAYLPLWVQGVLGLAAIFSGLTLIPMSLGW 308 Query: 301 VLGSF 305 + +F Sbjct: 309 PIAAF 313 >C1TJB9.1 C1TJB9_9FIRM Arabinose efflux permease family protein Length = 448 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 138/300 (46%), Positives = 185/300 (61%) Query: 6 LATFLAAIEGTVTGPAGPAIVGDFQGMQWLSWIFTAYLLAMAVTTPIFGKLSDLMGRKPV 65 +A LAAIE T+ A P IV D + +SW+F YLLA A+TTPI+GKL+DL GRK V Sbjct: 1 MAIVLAAIEVTIVSTAMPTIVRDLGNIHLMSWVFAIYLLATAITTPIYGKLADLFGRKKV 60 Query: 66 FIGGVAVFLLGSLLCGVAQSMEQLIVFRGLQGIGAGALIPMTFTIIGDIYSIQERAKTQG 125 F G+ +FL+GS LC +A SM LI FR +QGIGAGAL P++ TIIGDI++I+ERAK QG Sbjct: 61 FTIGIVIFLIGSSLCSLAHSMAHLIFFRAIQGIGAGALFPVSLTIIGDIFNIEERAKIQG 120 Query: 126 LLSSVWGISSLVGPLLGGYVVDYLSWRWVFVFNLPFGLLSIVFISRFLKEENVRRKAKLD 185 L+S++W IS ++GPL+GG++VD LSW W+F+ N+PFGLLSI I F E+ ++K +D Sbjct: 121 LISAIWFISGILGPLVGGFIVDLLSWHWIFLINIPFGLLSISLIKLFFHEQFTKKKRYID 180 Query: 186 LPGVXXXXXXXXXXXXXXXXXXQNLPWTSPXXXXXXXXXXXXXXIFWRVERRASEPMLPL 245 PG QN W SP +F+ +E ++ EP+LPL Sbjct: 181 YPGAITFTIGMTSLLYAIILGGQNKAWISPITLSLLINAVGFLSLFYFIELKSPEPILPL 240 Query: 246 GLFSIRNITVSTGANLLVSTLIIGLTTYVPLWVQGVXXXXXXXXXXXXXPMSVGWVLGSF 305 LF + + V A + T++IGL Y+P+WVQGV PMSVGW LG+F Sbjct: 241 NLFKLPMVMVPNLATFFLCTVLIGLNVYLPIWVQGVLSYKATGSGIALIPMSVGWTLGAF 300 >C4CJX8.1 C4CJX8_9CHLR Drug resistance transporter, EmrB/QacA subfamily Length = 521 Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 183/304 (60%) Query: 1 LTGVLLATFLAAIEGTVTGPAGPAIVGDFQGMQWLSWIFTAYLLAMAVTTPIFGKLSDLM 60 + V+L TFLAA++ ++ G A P ++G GM SW+F+AYLL T P++G+L+DL Sbjct: 10 VVAVMLGTFLAALDTSIVGTAMPTVIGQLGGMSLYSWVFSAYLLTSTTTVPLYGRLADLY 69 Query: 61 GRKPVFIGGVAVFLLGSLLCGVAQSMEQLIVFRGLQGIGAGALIPMTFTIIGDIYSIQER 120 GRKP+FI +FLLGS+LCG AQSM QL+ FR LQG+GAG +IP+T TI+GD++ ++ER Sbjct: 70 GRKPLFIAAAGIFLLGSMLCGAAQSMPQLVAFRALQGLGAGGIIPVTLTIVGDLFDVEER 129 Query: 121 AKTQGLLSSVWGISSLVGPLLGGYVVDYLSWRWVFVFNLPFGLLSIVFISRFLKEENVRR 180 A+ QGL S+VWG S++ GP +GG++VDY+ WRWVF NLPFG+ + + FL E+ R+ Sbjct: 130 ARMQGLFSAVWGTSAVAGPTVGGFIVDYVDWRWVFYINLPFGIAATILFWLFLNEQVERK 189 Query: 181 KAKLDLPGVXXXXXXXXXXXXXXXXXXQNLPWTSPXXXXXXXXXXXXXXIFWRVERRASE 240 + +D G + WT P F R E+RA+E Sbjct: 190 RHAIDYAGTVSLTLGVTALLVALLEVGEGRAWTDPIVVGSLALAVVLLVFFVRTEQRAAE 249 Query: 241 PMLPLGLFSIRNITVSTGANLLVSTLIIGLTTYVPLWVQGVXXXXXXXXXXXXXPMSVGW 300 P+LPL LF R I + A +LV + G+T+Y+PL+VQGV P S+GW Sbjct: 250 PILPLHLFRTRVIGAAFLAGILVGGAMFGVTSYLPLYVQGVLLGTAVTAGMVVAPNSIGW 309 Query: 301 VLGS 304 L S Sbjct: 310 SLAS 313 >C0Z997.1 C0Z997_BREBN Putative multidrug resistance protein Length = 478 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 134/307 (43%), Positives = 191/307 (62%), Gaps = 4/307 (1%) Query: 1 LTGVLLATFLAAIEGTVTGPAGPAIVGDFQGMQWLSWIFTAYLLAMAVTTPIFGKLSDLM 60 + ++L+TFLAA+EGT+ A P I D G + +SW++ Y+LA AV+ PI+GKL+DL Sbjct: 6 MIALMLSTFLAAMEGTIVSTAVPRITSDLAGFEQVSWVYAIYMLATAVSAPIYGKLADLF 65 Query: 61 GRKPVFIGGVAVFLLGSLLCGVAQSMEQLIVFRGLQGIGAGALIPMTFTIIGDIYSIQE- 119 GRK V + G+ +FLLGS LCGVA SM QLI+FR +QG+GAG+++P+T TIIGD+Y+ Q Sbjct: 66 GRKNVLLIGIGIFLLGSTLCGVATSMWQLIIFRAIQGLGAGSVMPITMTIIGDLYTEQTA 125 Query: 120 RAKTQGLLSSVWGISSLVGPLLGGYVVDYLSWRWVFVFNLPFGLLSIVFISRFLKEEN-- 177 RAK QG +S+VWG+S + GPL+GG++VD L+WR++F NLPFGL+S F+ FL +E Sbjct: 126 RAKAQGWISAVWGLSGVAGPLVGGFLVDTLTWRYIFFLNLPFGLVSF-FMLIFLYKEKLA 184 Query: 178 VRRKAKLDLPGVXXXXXXXXXXXXXXXXXXQNLPWTSPXXXXXXXXXXXXXXIFWRVERR 237 V+ K +D PG QN WTSP +F VE++ Sbjct: 185 VKEKRHIDYPGALIFSVGTIALLYALLTGSQNQSWTSPVTISLIVFALVTYLVFVSVEKK 244 Query: 238 ASEPMLPLGLFSIRNITVSTGANLLVSTLIIGLTTYVPLWVQGVXXXXXXXXXXXXXPMS 297 + EP++PL LF+ RN+T+ LL + ++I + Y+P+W QGV PM Sbjct: 245 SPEPLIPLSLFTNRNVTMINLLTLLTNGIVISMVVYLPIWSQGVLGESATMAGFVLTPMP 304 Query: 298 VGWVLGS 304 V W +GS Sbjct: 305 VCWTIGS 311 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.145 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,958,677,169 Number of extensions: 73025406 Number of successful extensions: 295556 Number of sequences better than 1.0e-05: 15413 Number of HSP's gapped: 289743 Number of HSP's successfully gapped: 15486 Length of query: 376 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 239 Effective length of database: 1,770,017,148 Effective search space: 423034098372 Effective search space used: 423034098372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)