BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0303.0012.p
         (97 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K538.1 B3K538_9BACI Drug resistance transporter, EmrB/QacA sub...    65   1e-09

>B3K538.1 B3K538_9BACI Drug resistance transporter, EmrB/QacA subfamily
          Length = 504

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 1   VGVAIFGSWLNLNVKWQLDGAPGSAEAGTD-INQLLHPQGESALSSEAWGSLKSALEGGL 59
           VGVA+FG W+N  +  +L   P +A   +D IN+LL P G + L   +   L   LEG L
Sbjct: 407 VGVAVFGLWVNAGIAGRLAAEPDAAGITSDDINKLLSPHGMAELPEGSGSLLSGILEGSL 466

Query: 60  HSLFIVMAVFAVLSLLITMGLRKGLPSLKEEPAAQKE 96
           +SLF+VMAV AV+ +LI    R   P    EP A +E
Sbjct: 467 NSLFVVMAVMAVICMLIVAAFRNAPP----EPEAGEE 499


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 569,110,894
Number of extensions: 18313520
Number of successful extensions: 41950
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 41960
Number of HSP's successfully gapped: 1
Length of query: 97
Length of database: 3,060,696,203
Length adjustment: 66
Effective length of query: 31
Effective length of database: 2,438,909,213
Effective search space: 75606185603
Effective search space used: 75606185603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)