BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0011.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K546.1 B3K546_9BACI Regulatory protein MarR 223 6e-57 A3I4W7.1 A3I4W7_9BACI Transcriptional regulator, MarR family pro... 169 9e-41 B1HP47.1 B1HP47_LYSSC Transcriptional regulator, MarR family 167 2e-40 A8FCE9.1 A8FCE9_BACP2 MarR family transcriptional regulator 166 7e-40 B4AET9.1 B4AET9_BACPU MarR family transcriptional regulator 166 7e-40 >B3K546.1 B3K546_9BACI Regulatory protein MarR Length = 156 Score = 223 bits (567), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 102/146 (69%), Positives = 124/146 (84%) Query: 4 SYERDTQLTLHLYRVFAKSFKSINEHAVTGSKIEGFNPTAFAVMEVLYYKGPQPIQQIGA 63 S+ERDTQL +HLYRVFAKSFKS+NEH V GSKIEGFNPT+FAVMEVL+YKG QPIQQIGA Sbjct: 4 SHERDTQLAMHLYRVFAKSFKSVNEHVVNGSKIEGFNPTSFAVMEVLFYKGRQPIQQIGA 63 Query: 64 KLLLQSGNVTYVIDKLEERGYLQRKPCPSDRRVIFAELTSEGERLMNEMYPKYSERLHLA 123 +LLLQSGNVTYV+DKL E+GY++R+PCP DRRVI+AELT GE+LM ++YP + + + A Sbjct: 64 QLLLQSGNVTYVVDKLVEKGYVRRRPCPEDRRVIYAELTPSGEQLMQKLYPLHEQHIQHA 123 Query: 124 FSGLSDEEKEQMITLLKKMGLQAEKL 149 GL +EEK Q+I LL KMG AE++ Sbjct: 124 LGGLDEEEKRQLIGLLGKMGKHAEQV 149 >A3I4W7.1 A3I4W7_9BACI Transcriptional regulator, MarR family protein Length = 148 Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 83/143 (58%), Positives = 105/143 (73%) Query: 8 DTQLTLHLYRVFAKSFKSINEHAVTGSKIEGFNPTAFAVMEVLYYKGPQPIQQIGAKLLL 67 D + +L LY V +++ K+INE + G NPT FAV+E+LY+KG QP+QQIG K+LL Sbjct: 5 DLKQSLKLYIVLSRALKAINETTHQLFQDNGLNPTEFAVLELLYHKGRQPLQQIGNKILL 64 Query: 68 QSGNVTYVIDKLEERGYLQRKPCPSDRRVIFAELTSEGERLMNEMYPKYSERLHLAFSGL 127 SG++TYVIDKLE+RGYL R CPSDRRV +AE+T EGE M E++PK+ + LH S L Sbjct: 65 ASGSITYVIDKLEKRGYLLRVSCPSDRRVTYAEITDEGEAFMGELFPKHEQHLHEIMSVL 124 Query: 128 SDEEKEQMITLLKKMGLQAEKLS 150 S EEKEQ ITLLKKMGL + LS Sbjct: 125 SSEEKEQAITLLKKMGLSIKDLS 147 >B1HP47.1 B1HP47_LYSSC Transcriptional regulator, MarR family Length = 148 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 83/143 (58%), Positives = 105/143 (73%) Query: 8 DTQLTLHLYRVFAKSFKSINEHAVTGSKIEGFNPTAFAVMEVLYYKGPQPIQQIGAKLLL 67 D + +L LY V +++ K+INE + G NPT FAV+E+LY+KG QP+QQIG K+LL Sbjct: 5 DLKPSLKLYIVLSRALKAINETTHQLFQDNGLNPTEFAVLELLYHKGRQPLQQIGNKILL 64 Query: 68 QSGNVTYVIDKLEERGYLQRKPCPSDRRVIFAELTSEGERLMNEMYPKYSERLHLAFSGL 127 SG++TYVIDKLE+RGYL R CPSDRRV +AE+T EGE M E++PK+ + LH S L Sbjct: 65 ASGSITYVIDKLEKRGYLLRVSCPSDRRVTYAEITDEGEAFMGELFPKHEQHLHEIMSVL 124 Query: 128 SDEEKEQMITLLKKMGLQAEKLS 150 S EEKEQ ITLLKKMGL + LS Sbjct: 125 SSEEKEQAITLLKKMGLSIKDLS 147 >A8FCE9.1 A8FCE9_BACP2 MarR family transcriptional regulator Length = 153 Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 112/144 (77%) Query: 6 ERDTQLTLHLYRVFAKSFKSINEHAVTGSKIEGFNPTAFAVMEVLYYKGPQPIQQIGAKL 65 E + + ++ LY+VFA++FKS++EH++ SK GFNPT FAV+E+LY +G Q +QQIG++L Sbjct: 7 EEEVERSMTLYKVFARAFKSVSEHSIRDSKEHGFNPTEFAVLELLYTRGAQKLQQIGSRL 66 Query: 66 LLQSGNVTYVIDKLEERGYLQRKPCPSDRRVIFAELTSEGERLMNEMYPKYSERLHLAFS 125 LL SGNVTYVIDKLE G+++R+ P D+R ++A LT +G ++++YP +S R+ AFS Sbjct: 67 LLVSGNVTYVIDKLERNGFIEREQDPKDKRSVYAHLTDKGRSYLDKIYPIHSLRIARAFS 126 Query: 126 GLSDEEKEQMITLLKKMGLQAEKL 149 GLS EE+EQ+I+LLKK G+ ++ L Sbjct: 127 GLSREEQEQLISLLKKAGIHSQHL 150 >B4AET9.1 B4AET9_BACPU MarR family transcriptional regulator Length = 153 Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 75/144 (52%), Positives = 112/144 (77%) Query: 6 ERDTQLTLHLYRVFAKSFKSINEHAVTGSKIEGFNPTAFAVMEVLYYKGPQPIQQIGAKL 65 E + + ++ LY+VFA++FKS++EH++ SK GFNPT FAV+E+LY +G Q +QQIG++L Sbjct: 7 EEEVERSMTLYKVFARAFKSVSEHSIRDSKEHGFNPTEFAVLELLYTRGAQKLQQIGSRL 66 Query: 66 LLQSGNVTYVIDKLEERGYLQRKPCPSDRRVIFAELTSEGERLMNEMYPKYSERLHLAFS 125 LL SGNVTYVIDKLE G+++R+ P D+R ++A LT +G ++++YP +S R+ AFS Sbjct: 67 LLVSGNVTYVIDKLERNGFIEREQDPKDKRSVYAHLTDKGRSYLDKIYPIHSLRIARAFS 126 Query: 126 GLSDEEKEQMITLLKKMGLQAEKL 149 GLS EE+EQ+I+LLKK G+ ++ L Sbjct: 127 GLSREEQEQLISLLKKAGIHSQHL 150 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 867,218,837 Number of extensions: 33483036 Number of successful extensions: 108481 Number of sequences better than 1.0e-05: 1070 Number of HSP's gapped: 108929 Number of HSP's successfully gapped: 1070 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)