BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0009.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K547.1 B3K547_9BACI ABC transporter related 279 2e-73 Q24XS0.1 Q24XS0_DESHY Putative uncharacterized protein 209 3e-52 B8FUB2.1 B8FUB2_DESHD ABC transporter related 208 4e-52 C3B333.1 C3B333_BACMY ABC transporter-related protein 203 1e-50 C3AL58.1 C3AL58_BACMY ABC transporter-related protein 203 1e-50 >B3K547.1 B3K547_9BACI ABC transporter related Length = 243 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 143/232 (61%), Positives = 162/232 (69%) Query: 30 DTVLDVYIEEAGYEAGDRRISNISFQVXXXXXXXXXXPNGAGKSTTIKTLLGLLKHAKAR 89 + VL V I+EAGYE RI +ISFQV PNGAGKSTTIKT+LGLLK +KA Sbjct: 12 EPVLKVDIQEAGYEPSRPRIRDISFQVVPGELLGLIGPNGAGKSTTIKTVLGLLKDSKAD 71 Query: 90 VKLGGANKSYAYVPEQPVFYEDLTLWEHLDLAAAAYGLSYETFGATAEKLLSQFGMEQVR 149 V + G+ YAYVPEQPVFYEDLTLWEHLDLAAAA+G+ + F A +LL QFGME VR Sbjct: 72 VYIAGSPPRYAYVPEQPVFYEDLTLWEHLDLAAAAFGMDDQHFEEQAAQLLRQFGMESVR 131 Query: 150 NDLPAGFSXXXXXXXXXXXXFLVQPDIYIVDEPFIGLDPRATKDFXXXXXXXXXXXXXVL 209 ++LP GFS FL +PD+YIVDEPFIGLDPRAT+DF VL Sbjct: 132 HELPGGFSKGMKQKMMLMIGFLSKPDVYIVDEPFIGLDPRATRDFLNLLLEERRRGAGVL 191 Query: 210 MSTHVLDTAEKICDSFVLISGGRMTATGTLEDIRAQAGLPEASLFDCFDELT 261 MSTHVLDTAEKICD FVLISGGR+ + GTL+ IR A LP ASLFDCFD LT Sbjct: 192 MSTHVLDTAEKICDRFVLISGGRIASEGTLDQIRQSAELPGASLFDCFDALT 243 >Q24XS0.1 Q24XS0_DESHY Putative uncharacterized protein Length = 239 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 105/232 (45%), Positives = 137/232 (59%) Query: 29 RDTVLDVYIEEAGYEAGDRRISNISFQVXXXXXXXXXXPNGAGKSTTIKTLLGLLKHAKA 88 R ++ I GY D + +ISF+V PNGAGKST +K ++G L + + Sbjct: 3 RLNLVQANITSGGYLKKDLILKDISFEVKPGELVGLIGPNGAGKSTILKAIMGQLPYLEG 62 Query: 89 RVKLGGANKSYAYVPEQPVFYEDLTLWEHLDLAAAAYGLSYETFGATAEKLLSQFGMEQV 148 +V+ A+ YAY+PEQPV Y++LTLWEHL+ AAA +S ETF E+LL F + + Sbjct: 63 KVEFENAHTHYAYIPEQPVLYDNLTLWEHLEFAAAVGKMSRETFVPRVEELLKLFRLHKE 122 Query: 149 RNDLPAGFSXXXXXXXXXXXXFLVQPDIYIVDEPFIGLDPRATKDFXXXXXXXXXXXXXV 208 ++ LP FS FL++P +YIVDEPFIGLDP +DF + Sbjct: 123 KHQLPVTFSKGMQQKVMLILGFLLRPPLYIVDEPFIGLDPHGMRDFLQLVDQVRQDGAGI 182 Query: 209 LMSTHVLDTAEKICDSFVLISGGRMTATGTLEDIRAQAGLPEASLFDCFDEL 260 LMSTH LDTAEKIC SF+LI G + + G LEDIR Q+ LPE SLFDCF L Sbjct: 183 LMSTHSLDTAEKICTSFILIHEGTIISQGNLEDIRRQSRLPEGSLFDCFINL 234 >B8FUB2.1 B8FUB2_DESHD ABC transporter related Length = 236 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 104/224 (46%), Positives = 134/224 (59%) Query: 37 IEEAGYEAGDRRISNISFQVXXXXXXXXXXPNGAGKSTTIKTLLGLLKHAKARVKLGGAN 96 I GY D + +ISF+V PNGAGKST +K ++G L + + +V+ A+ Sbjct: 8 ITSGGYLKKDLILKDISFEVKPGELVGLIGPNGAGKSTILKAIMGQLPYLEGKVEFENAH 67 Query: 97 KSYAYVPEQPVFYEDLTLWEHLDLAAAAYGLSYETFGATAEKLLSQFGMEQVRNDLPAGF 156 YAY+PEQPV Y++LTLWEHL+ AAA +S ETF E+LL F + + ++ LP F Sbjct: 68 THYAYIPEQPVLYDNLTLWEHLEFAAAVGKMSQETFVPRVEELLKLFRLHKEKHQLPVTF 127 Query: 157 SXXXXXXXXXXXXFLVQPDIYIVDEPFIGLDPRATKDFXXXXXXXXXXXXXVLMSTHVLD 216 S FL++P +YIVDEPFIGLDP +DF +LMSTH LD Sbjct: 128 SKGMQQKVMLILGFLLRPPLYIVDEPFIGLDPHGMRDFLQLVDQVRQDGAGILMSTHSLD 187 Query: 217 TAEKICDSFVLISGGRMTATGTLEDIRAQAGLPEASLFDCFDEL 260 TAEKIC SF+LI G + + G LEDIR Q+ LPE SLFDCF L Sbjct: 188 TAEKICTSFILIHEGTIISQGNLEDIRRQSRLPEGSLFDCFINL 231 >C3B333.1 C3B333_BACMY ABC transporter-related protein Length = 256 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/231 (42%), Positives = 139/231 (60%) Query: 31 TVLDVYIEEAGYEAGDRRISNISFQVXXXXXXXXXXPNGAGKSTTIKTLLGLLKHAKARV 90 +L V I AGYEAG++ I +I+F + NGAGKSTTIK++LGLL + + + Sbjct: 15 NLLQVNIRSAGYEAGEKTIHDIAFSIEKGELVALIGANGAGKSTTIKSMLGLLANMEGEI 74 Query: 91 KLGGANKSYAYVPEQPVFYEDLTLWEHLDLAAAAYGLSYETFGATAEKLLSQFGMEQVRN 150 G YAYVPE P +Y+ LTLWEH++L AA G ++ A++LL F ME+ ++ Sbjct: 75 SFGEKENPYAYVPEHPTYYDYLTLWEHIELLMAARGCEIGSWEERAQELLHTFRMEKHKH 134 Query: 151 DLPAGFSXXXXXXXXXXXXFLVQPDIYIVDEPFIGLDPRATKDFXXXXXXXXXXXXXVLM 210 + + FS FL +PD YI+DEPFIGLDP AT++F +L+ Sbjct: 135 EYLSKFSKGMKQKSMLILAFLTEPDFYIIDEPFIGLDPVATREFLNFLYKEKERGVGILL 194 Query: 211 STHVLDTAEKICDSFVLISGGRMTATGTLEDIRAQAGLPEASLFDCFDELT 261 THVLDTAE+IC+ F+LIS G + A G L+ I++ A +PE+ L DCFD + Sbjct: 195 CTHVLDTAERICERFLLISQGTLLANGNLQTIQSLAEMPESPLLDCFDAIV 245 >C3AL58.1 C3AL58_BACMY ABC transporter-related protein Length = 256 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/231 (42%), Positives = 139/231 (60%) Query: 31 TVLDVYIEEAGYEAGDRRISNISFQVXXXXXXXXXXPNGAGKSTTIKTLLGLLKHAKARV 90 +L V I AGYEAG++ I +I+F + NGAGKSTTIK++LGLL + + + Sbjct: 15 NLLQVNIRSAGYEAGEKTIHDIAFSIEKGELVALIGANGAGKSTTIKSMLGLLANMEGEI 74 Query: 91 KLGGANKSYAYVPEQPVFYEDLTLWEHLDLAAAAYGLSYETFGATAEKLLSQFGMEQVRN 150 G YAYVPE P +Y+ LTLWEH++L AA G ++ A++LL F ME+ ++ Sbjct: 75 SFGEKENPYAYVPEHPTYYDYLTLWEHIELLMAARGCEIGSWEERAQELLHTFRMEKHKH 134 Query: 151 DLPAGFSXXXXXXXXXXXXFLVQPDIYIVDEPFIGLDPRATKDFXXXXXXXXXXXXXVLM 210 + + FS FL +PD YI+DEPFIGLDP AT++F +L+ Sbjct: 135 EYLSKFSKGMKQKSMLILAFLTEPDFYIIDEPFIGLDPVATREFLNFLYKEKERGVGILL 194 Query: 211 STHVLDTAEKICDSFVLISGGRMTATGTLEDIRAQAGLPEASLFDCFDELT 261 THVLDTAE+IC+ F+LIS G + A G L+ I++ A +PE+ L DCFD + Sbjct: 195 CTHVLDTAERICERFLLISQGTLLANGNLQTIQSLAEMPESPLLDCFDAIV 245 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,338,128,277 Number of extensions: 47070470 Number of successful extensions: 292425 Number of sequences better than 1.0e-05: 11486 Number of HSP's gapped: 292082 Number of HSP's successfully gapped: 11950 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)