BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0303.0008.p
         (416 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K548.1 B3K548_9BACI Putative uncharacterized protein                147   2e-33

>B3K548.1 B3K548_9BACI Putative uncharacterized protein
          Length = 423

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 154/349 (44%), Gaps = 2/349 (0%)

Query: 14  LFKRRLFSHFREQSAIIRTAADWTVXXXXXXXXXXXXXXXXXXXWNHELPAWTXXXXXXX 73
           L  RR+ +H++ Q   + T  DW V                   W   LP W        
Sbjct: 15  LLWRRVTAHWKNQRDNLATVVDWVVMLYIIVPGLLLGGGLYRELWTSPLPGWVQFLPLQA 74

Query: 74  XXXXXXXXXXXXXXXXXXXXXXXXXXRQRENWIRTIVLRGTIYSLAVTSLKMAAVYAILL 133
                                     +QRE W++ +++ G  YS AV+++K   +  + L
Sbjct: 75  VVGILLFMFSGRVLLFFEEADTLFLRQQRE-WMKGLMIGGMAYSHAVSTIKGLIISVLAL 133

Query: 134 PFIVRGYGVSPXXXXXXXXXXXXCSWCVKLLGHIVKVQRQGFRRWLWLIPAVTVPCGIYI 193
           P +VR + ++             C+WC  L   +++ + +G+R+ L       +  G+  
Sbjct: 134 PILVREHEITGTALMTLLAVTVVCAWCANLWTAMIRSRYKGWRKHLMTYVVRWLSFGLLT 193

Query: 194 RAGLFWKDSPSXXXXXXXXXXXXXXXXIRYRLRLSGTFMNDVREDYKQRMRIAALLLRGV 253
               FW  S                   R RL + GTF+ D RED K R+++   LL   
Sbjct: 194 LLVTFWLQSYVVIWAAVLLLLILLFFLSRKRLAMQGTFLADAREDAKTRVQLTEKLLVQA 253

Query: 254 LDKPRPTRYKPWIFRKSQPLLKSKTPESRFTAAAIKALVRNPAHLKLYLSFTGVGLIAVF 313
           + KP   R K W  RKS  L K  T E R   A +KA++R P  L LY+  T VG+ A++
Sbjct: 254 VGKPPSIRSKTWFMRKSGRLFKG-TAEKRLADAGLKAILRQPESLLLYVQITLVGIPAIW 312

Query: 314 IVPSLLKWLIFALLVALMAYWLSSFWLLFSGDDYIGILPFTKEQKAVAG 362
           + P ++K +++  LV +M+YWL++ W LF+  +++ +LPFT +Q   AG
Sbjct: 313 LPPLIIKIIVYVALVLMMSYWLNTRWALFAKAEFMHVLPFTNQQHRAAG 361


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.141    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,941,092,399
Number of extensions: 65798954
Number of successful extensions: 274830
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 274874
Number of HSP's successfully gapped: 12
Length of query: 416
Length of database: 3,060,696,203
Length adjustment: 138
Effective length of query: 278
Effective length of database: 1,760,596,133
Effective search space: 489445724974
Effective search space used: 489445724974
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 132 (55.5 bits)