BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0007.p (423 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K549.1 B3K549_9BACI HI0933 family protein 566 e-159 B1D663.1 B1D663_9BACL HI0933 family protein 515 e-144 Q4MVK9.1 Q4MVK9_BACCE Putative uncharacterized protein 510 e-142 C3C972.1 C3C972_BACTU Putative uncharacterized protein 508 e-142 C2UKA7.1 C2UKA7_BACCE Putative uncharacterized protein 508 e-142 >B3K549.1 B3K549_9BACI HI0933 family protein Length = 422 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/398 (67%), Positives = 327/398 (82%) Query: 4 NYDVIIIGGGPSGLMXXXXXXXXXXXVLLVDKGSRLGRKLGISGGGRCNVTNAKETAELI 63 +YD+I++GGGPSGLM VLL+DKG +LGRKLGISGGGRCNVTNAKE ELI Sbjct: 3 DYDIIVVGGGPSGLMSCVAAGERGASVLLIDKGDKLGRKLGISGGGRCNVTNAKEQDELI 62 Query: 64 SHIPGNGRFLYSAFDHFNNLDIIRFFENLGIALKEEDNGRMFPVSDKASSVVSALIGKVR 123 ++IPGNGRFLYSAF H+NN DI+ FFE LGI LKEEDNGRMFPV+DKASSVV+ALIGKV+ Sbjct: 63 ANIPGNGRFLYSAFQHWNNRDIMTFFEGLGIRLKEEDNGRMFPVTDKASSVVNALIGKVK 122 Query: 124 SLGVQMITDSPVAEVLYGNGSVKGVRLTTGRTLSASAVVIATGGKSVPQTGSTGDGYPWA 183 LG + T+SPV VLY NG GV L +G + +S V+IATGG+SVPQTGSTGDGYPWA Sbjct: 123 ELGTDIRTNSPVNRVLYENGRTAGVELKSGEVIHSSCVIIATGGQSVPQTGSTGDGYPWA 182 Query: 184 EAAGHTITELFPTEVPILSREGWIKSGELQGLSLRDVTLTVWNPKGKRVIAHRGDMIFTH 243 EAAGHTITEL+PTEVPI+S E +I S ELQGLSLR+V L+VWNPKGK+VIAHRGDM+FTH Sbjct: 183 EAAGHTITELYPTEVPIVSTEPFIASKELQGLSLREVELSVWNPKGKKVIAHRGDMLFTH 242 Query: 244 FGLSGPIALRCSQFLRQVQRKSGTDTVELSIDLFPDLNPQEMEEQLQNKLELEPKKALRN 303 FG+SGPIALRCSQF+RQVQRK V+++ID+FP+ + E+ +L+ +LE EP+K+++N Sbjct: 243 FGVSGPIALRCSQFIRQVQRKFDVVNVDMAIDMFPERSQTELAAELKGRLEEEPRKSIKN 302 Query: 304 SLKGLLLERMIPLLLAKAELDGDTTGHHLPKSGLQALAALLKRLPVQVYGTRSLEEAFVT 363 LKG+L ERMIPLLL+K+ +D D + K+ + LA++LK+ + GTRSL+EAFVT Sbjct: 303 VLKGMLPERMIPLLLSKSSIDSDMICSGISKAAQENLASVLKKFTFRASGTRSLKEAFVT 362 Query: 364 GGGVNLKEINPRTMESKLMPGLFFCGEILDIHGYTGGY 401 GGGV+LKEI P++MESKLMPGLFFCGEI+DIHGYTGGY Sbjct: 363 GGGVSLKEIQPKSMESKLMPGLFFCGEIMDIHGYTGGY 400 >B1D663.1 B1D663_9BACL HI0933 family protein Length = 427 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 256/412 (62%), Positives = 324/412 (78%), Gaps = 5/412 (1%) Query: 5 YDVIIIGGGPSGLMXXXXXXXXXXXVLLVDKGSRLGRKLGISGGGRCNVTNAKETAELIS 64 +DVIIIGGGPSGLM LL+DKG +LGRKLGISGGGRCNVTNA E ELI Sbjct: 3 FDVIIIGGGPSGLMAAVAASGAGASTLLIDKGDKLGRKLGISGGGRCNVTNANEMDELIR 62 Query: 65 HIPGNGRFLYSAFDHFNNLDIIRFFENLGIALKEEDNGRMFPVSDKASSVVSALIGKVRS 124 +IPGNGRFL+SA + F N +II FFE +GIALKEED GRMFPVSDKA +VV ALI KV+ Sbjct: 63 NIPGNGRFLFSALNQFGNREIIAFFEGMGIALKEEDRGRMFPVSDKAKTVVDALIRKVKE 122 Query: 125 LGVQMITDSPVAEVLYGNGSVKGVRLTTGRTLSASAVVIATGGKSVPQTGSTGDGYPWAE 184 GV++ T+ PV EVLY NG+V G+RL + + +V++ATGGKSVP TGSTGDGYPWA+ Sbjct: 123 QGVEIRTNMPVKEVLYENGTVTGIRLASNEIIHTKSVIVATGGKSVPHTGSTGDGYPWAK 182 Query: 185 AAGHTITELFPTEVPILSREGWIKSGELQGLSLRDVTLTVWNPKGKRVIAHRGDMIFTHF 244 AGHTIT+L+PTEVP+ S E WI+S ELQGLSLRDVTLTVWN K K++++H+GDMIFTHF Sbjct: 183 KAGHTITDLYPTEVPLTSAEPWIRSKELQGLSLRDVTLTVWNAKNKKLVSHQGDMIFTHF 242 Query: 245 GLSGPIALRCSQF-LRQVQRKSGTD----TVELSIDLFPDLNPQEMEEQLQNKLELEPKK 299 GLSGP ALRCSQF ++++++ SG++ TV ++IDL PD + E+ ++ +L+PKK Sbjct: 243 GLSGPAALRCSQFVVKELKKASGSEGGIQTVLVTIDLLPDRSEAEIFDETLKLAKLDPKK 302 Query: 300 ALRNSLKGLLLERMIPLLLAKAELDGDTTGHHLPKSGLQALAALLKRLPVQVYGTRSLEE 359 A++N LKG + ER++ LLL + E++GD T ++PK + LA +K+ PV V GT S+EE Sbjct: 303 AVKNVLKGYVQERLLELLLRQCEINGDITYDNIPKEPWRELAKRMKQFPVAVNGTLSIEE 362 Query: 360 AFVTGGGVNLKEINPRTMESKLMPGLFFCGEILDIHGYTGGYNITAAFSTGY 411 AFVTGGGV+LKEI+P+TM+SKL GL+FCGE+LDIHGYTGGYNITAAF+TG+ Sbjct: 363 AFVTGGGVHLKEIDPKTMQSKLAQGLYFCGEVLDIHGYTGGYNITAAFTTGH 414 >Q4MVK9.1 Q4MVK9_BACCE Putative uncharacterized protein Length = 423 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 247/419 (58%), Positives = 308/419 (73%) Query: 4 NYDVIIIGGGPSGLMXXXXXXXXXXXVLLVDKGSRLGRKLGISGGGRCNVTNAKETAELI 63 +YDVI+IGGGPSGLM VLL+DKG++LGRKL ISGGGRCNVTN E++ Sbjct: 2 HYDVIVIGGGPSGLMAAIGAAEEGASVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV 61 Query: 64 SHIPGNGRFLYSAFDHFNNLDIIRFFENLGIALKEEDNGRMFPVSDKASSVVSALIGKVR 123 HIPGNGRFLYSAF FNN DII FFENLG+ LKEED+GRMFPVS+KA SVV AL+ +++ Sbjct: 62 KHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121 Query: 124 SLGVQMITDSPVAEVLYGNGSVKGVRLTTGRTLSASAVVIATGGKSVPQTGSTGDGYPWA 183 LGV+M T++PV + Y NG K V L TG L + VVIA GGKSVPQTGSTGDGY WA Sbjct: 122 DLGVKMRTNTPVETIEYENGQTKAVVLQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWA 181 Query: 184 EAAGHTITELFPTEVPILSREGWIKSGELQGLSLRDVTLTVWNPKGKRVIAHRGDMIFTH 243 E AGHTITELFPTEVPILS E +I+ LQGL+LRDV L+V NPKGK +I+H+ DM+FTH Sbjct: 182 EKAGHTITELFPTEVPILSNEPFIRDRSLQGLALRDVNLSVLNPKGKAIISHKMDMLFTH 241 Query: 244 FGLSGPIALRCSQFLRQVQRKSGTDTVELSIDLFPDLNPQEMEEQLQNKLELEPKKALRN 303 FGLSGP ALRCSQF+ + +K T+T+++SID P+ N +++ +++ +++ EPKK ++N Sbjct: 242 FGLSGPAALRCSQFVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLKQMKEEPKKGIKN 301 Query: 304 SLKGLLLERMIPLLLAKAELDGDTTGHHLPKSGLQALAALLKRLPVQVYGTRSLEEAFVT 363 LKG + ER LL K E+DG + ++AL K V V GT+S+E+AFVT Sbjct: 302 VLKGYVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVT 361 Query: 364 GGGVNLKEINPRTMESKLMPGLFFCGEILDIHGYTGGYNITAAFSTGYTAGKHAAEQYR 422 GGGV++KEINP+ M SK GL+FCGE+LDIHGYTGGYNIT+A TG AG A E + Sbjct: 362 GGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENAK 420 >C3C972.1 C3C972_BACTU Putative uncharacterized protein Length = 423 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 247/419 (58%), Positives = 308/419 (73%) Query: 4 NYDVIIIGGGPSGLMXXXXXXXXXXXVLLVDKGSRLGRKLGISGGGRCNVTNAKETAELI 63 +YDVI+IGGGPSGLM VLL+DKG++LGRKL ISGGGRCNVTN E++ Sbjct: 2 HYDVIVIGGGPSGLMAAIGAAEEGASVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV 61 Query: 64 SHIPGNGRFLYSAFDHFNNLDIIRFFENLGIALKEEDNGRMFPVSDKASSVVSALIGKVR 123 HIPGNGRFLYSAF FNN DII FFENLG+ LKEED+GRMFPVS+KA SVV AL+ +++ Sbjct: 62 KHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121 Query: 124 SLGVQMITDSPVAEVLYGNGSVKGVRLTTGRTLSASAVVIATGGKSVPQTGSTGDGYPWA 183 LGV+M T++PV + Y NG K V L TG L + VVIA GGKSVPQTGSTGDGY WA Sbjct: 122 DLGVKMRTNTPVETIEYENGQTKAVVLQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWA 181 Query: 184 EAAGHTITELFPTEVPILSREGWIKSGELQGLSLRDVTLTVWNPKGKRVIAHRGDMIFTH 243 E AGHTITELFPTEVPILS E +I+ LQGL+LRDV L+V NPKGK +I+H+ DM+FTH Sbjct: 182 EKAGHTITELFPTEVPILSNEPFIRDRSLQGLALRDVNLSVLNPKGKAIISHKMDMLFTH 241 Query: 244 FGLSGPIALRCSQFLRQVQRKSGTDTVELSIDLFPDLNPQEMEEQLQNKLELEPKKALRN 303 FGLSGP ALRCSQF+ + +K T+TV++SID P+ N +++ +++ +++ +PKK ++N Sbjct: 242 FGLSGPAALRCSQFVVKALKKFKTNTVQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKN 301 Query: 304 SLKGLLLERMIPLLLAKAELDGDTTGHHLPKSGLQALAALLKRLPVQVYGTRSLEEAFVT 363 LKG + ER LL K E+DG + ++AL K V V GT+S+E+AFVT Sbjct: 302 VLKGYVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVT 361 Query: 364 GGGVNLKEINPRTMESKLMPGLFFCGEILDIHGYTGGYNITAAFSTGYTAGKHAAEQYR 422 GGGV++KEINP+ M SK GL+FCGE+LDIHGYTGGYNIT+A TG AG A E + Sbjct: 362 GGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENAK 420 >C2UKA7.1 C2UKA7_BACCE Putative uncharacterized protein Length = 434 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 247/424 (58%), Positives = 313/424 (73%), Gaps = 4/424 (0%) Query: 4 NYDVIIIGGGPSGLMXXXXXXXXXXXVLLVDKGSRLGRKLGISGGGRCNVTNAKETAELI 63 +YDVI+IGGGPSGLM VLL+DKG++LGRKL ISGGGRCNVTN E++ Sbjct: 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV 61 Query: 64 SHIPGNGRFLYSAFDHFNNLDIIRFFENLGIALKEEDNGRMFPVSDKASSVVSALIGKVR 123 HIPGNGRFLYSAF FNN DII FFENLG+ LKEED+GRMFPVS+KA SVV AL+ +++ Sbjct: 62 KHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121 Query: 124 SLGVQMITDSPVAEVLYGNGSVKGVRLTTGRTLSASAVVIATGGKSVPQTGSTGDGYPWA 183 LGV++ T++PV + Y NG K V L TG L + VVIA GGKSVPQTGSTGDGY WA Sbjct: 122 DLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWA 181 Query: 184 EAAGHTITELFPTEVPILSREGWIKSGELQGLSLRDVTLTVWNPKGKRVIAHRGDMIFTH 243 E AGHTITELFPTEVPILS E +I+ LQGL+LRD+ L+V NPKGK +I+H+ DM+FTH Sbjct: 182 EKAGHTITELFPTEVPILSNEPFIRDRSLQGLALRDINLSVLNPKGKAIISHKMDMLFTH 241 Query: 244 FGLSGPIALRCSQFLRQVQRKSGTDTVELSIDLFPDLNPQEMEEQLQNKLELEPKKALRN 303 FGLSGP ALRCSQF+ + +K T+T+++SID P+ N +++ +++ +++ +PKK ++N Sbjct: 242 FGLSGPAALRCSQFVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKN 301 Query: 304 SLKGLLLERMIPLLLAKAELDGDTTGHHLPKSGLQALAALLKRLPVQVYGTRSLEEAFVT 363 LKG + ER LL K E+DG + ++AL K V V GT+S+E+AFVT Sbjct: 302 VLKGYVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVT 361 Query: 364 GGGVNLKEINPRTMESKLMPGLFFCGEILDIHGYTGGYNITAAFST----GYTAGKHAAE 419 GGGV++KEINP+ M SK GL+FCGE+LDIHGYTGGYNIT+A T G TAG++A Sbjct: 362 GGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENAKM 421 Query: 420 QYRK 423 QY+K Sbjct: 422 QYKK 425 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,593,869,895 Number of extensions: 113451419 Number of successful extensions: 349105 Number of sequences better than 1.0e-05: 1316 Number of HSP's gapped: 344987 Number of HSP's successfully gapped: 1340 Length of query: 423 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 285 Effective length of database: 1,760,596,133 Effective search space: 501769897905 Effective search space used: 501769897905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)