BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0006.p (582 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K550.1 B3K550_9BACI Sensor protein EC=2.7.13.3 407 e-111 B1D661.1 B1D661_9BACL Sensor protein EC=2.7.13.3 313 4e-83 C1TEW0.1 C1TEW0_9FIRM PAS domain S-box protein 200 3e-49 A5D1A7.1 A5D1A7_PELTS Sensor protein EC=2.7.13.3 197 2e-48 A4J400.1 A4J400_DESRM Sensor protein EC=2.7.13.3 196 7e-48 >B3K550.1 B3K550_9BACI Sensor protein EC=2.7.13.3 Length = 574 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/560 (42%), Positives = 341/560 (60%), Gaps = 17/560 (3%) Query: 9 KDILLQITAAFSFLCMFKWWIDQGHIVRRNGKFPDD----QSFLILSCALSIVFCMFLST 64 KDILLQ+ + + + +D+ H+ N K PDD + ++++ +S V C+ +S Sbjct: 6 KDILLQVLLSGTLIFHLPLLLDR-HLKCLNKKNPDDLLRFRKHIVIASGISTVLCVLISA 64 Query: 65 TLFGAIYLNLAMIPAYIGILYAGFRSGISLAVFFILCTALFSEPPGLSN--LVLNTGVLL 122 + ++L +IP ++GILY SG+ LAV + L + G S LVLN VL Sbjct: 65 MSDYYVPIHLGVIPLFLGILYGSRSSGLCLAVIYFTSHGLIN---GWSTTGLVLNLLVLG 121 Query: 123 YPLLFGMAKPFKSENIMGKIFILWSVLFPSMMFIVLAPKMYGPSLYDT-SPKEMAVALFY 181 Y LL ++ FK ++ KI+ LWS L P+M+ IV M G + D +P + V + Y Sbjct: 122 YSLLPRVSSNFKKGSMTEKIYWLWSALVPAMLIIVACHAMEGKARNDDLNPDTILVTILY 181 Query: 182 LLVPVILGGSLLYFIETAWDRQQTQEKMKGISEKFERESEKLQQITNVVPVSIMLLDDMG 241 +L+ + G ++Y+IE R + G + + E L ++ ++P+ ++ +D G Sbjct: 182 MLIGIFYSGVIVYWIELTSGRLAS-----GQYDVKDGEIASLTKMMEMIPLGMVAVDRSG 236 Query: 242 YVTEINDCMLDLFRQHEPGITREAIVGQQAERLLLQEINGEALK-RMKDSGFSKQRYNEK 300 + N ++ FR P +T + ++G+ LL I E L+ R + + + E Sbjct: 237 NIIAFNQPLIRSFRSVFPNLTTKDVIGRPLFDLLEGMIQKEHLRSRFQRAINGVESTGEI 296 Query: 301 VQYDSRTYNVFSAPXXXXXXXXXXXRVLIVQDLTEEEKFRSELDNVERLTLVGQMAAGIT 360 ++ +R Y+ P V I++D+TE EK R+E NVERL+LVGQMAA IT Sbjct: 297 MRSATRVYSTGIYPLIHNGNGDIMGAVGIMEDITELEKLRTEFINVERLSLVGQMAASIT 356 Query: 361 HEIRNPMAVVRGFLQLMREKSPGEMDSYYQIVIEELDRANGIINDFLSLAQSRISDKEPV 420 HEIRNPMAVVRGFLQLM+EKSP +D YY+IV+EELDRANGII+DFLSLAQ+R ++KE Sbjct: 357 HEIRNPMAVVRGFLQLMKEKSPDTLDHYYRIVMEELDRANGIISDFLSLAQNRAAEKEEC 416 Query: 421 QLHHIIKELAPLLWADANLRGQSVEXXXXXXXXXXXXXXREIKQLILNLARNGMEAMEPK 480 LH II EL+PLLWADANLRGQ++E +E+KQLILNL RNGMEAM+ K Sbjct: 417 HLHDIIHELSPLLWADANLRGQNIELKLGTGIPELYLNAKEMKQLILNLCRNGMEAMDDK 476 Query: 481 GELLLETHFNENKVELIIQDTGSGIPQSQLEKLFVPFYTTKNQGTGLGLPLCLSIAERHH 540 G L +ET N +L + DTG GIP+++LE+LF PF+TTK++GTGLGL LC+SI +RHH Sbjct: 477 GTLTIETRLEGNLAQLYVADTGIGIPENELERLFEPFFTTKSKGTGLGLALCMSIVQRHH 536 Query: 541 GSIRVESQVGKGTAFIVSFP 560 G+I V+S +G+GT FI+SFP Sbjct: 537 GTIDVKSHLGEGTVFIISFP 556 >B1D661.1 B1D661_9BACL Sensor protein EC=2.7.13.3 Length = 549 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 208/574 (36%), Positives = 306/574 (53%), Gaps = 53/574 (9%) Query: 8 VKDILLQITAAFSFLCMFKWWIDQGHIVRRNGKFPDDQSFLILSCALSIVFCMFLSTTLF 67 +K++LLQ F+ W + RR P + LS +S+ CM + + Sbjct: 2 LKELLLQFFITLVPAFAFQLWHNSSRHWRR---IP---VIIGLSSCISMALCMLFTKDYY 55 Query: 68 GAIYLNLAMIPAYIGILYAGFRSGISLAVFFILCTALFS-----EPPGLSNLVLNTGVLL 122 G LN ++P IG LY G F +L + +++ + V+ +L Sbjct: 56 GC-ELNFRLMPLLIGSLYGG-------PYFLLLLSGVYTALRIESLDSMGETVVFVSFML 107 Query: 123 YPLLF--GMAKPFKSENIMGKIFILWSVLFPSMMFIVLAPKMYGPSLYDTSPKEMAVALF 180 ++F + K F+ + KI I+ ++ +F++L+ + + E + F Sbjct: 108 VYVVFMPSIIKAFQRSDRRRKIRIVMQLIVGMCVFVILSFTVAVVTTGMPINLEFVLLAF 167 Query: 181 YLLVPVILGGSL-LYFIETAWDRQQTQEKMKGISEKFERESEKLQQITNVVPVSIMLLDD 239 LV ++ + +Y IET + Q +K +S + +E EKL+Q N ++++L+++ Sbjct: 168 LTLVMTVISSWISVYTIETFKENAQLHYDVKRVSLSYRQEVEKLEQFINQTKIAVVLVNE 227 Query: 240 MGYVTEINDCMLDLFRQHEPGITREAIVGQ------------QAERLLLQEINGEALKRM 287 G +T +N+ + + + IVGQ +LL + +NG++L + Sbjct: 228 YGKITHLNEMGVQMLTGGQN------IVGQYFYEFFENGLEDSNAKLLREALNGQSLV-L 280 Query: 288 KDSGFSKQRYNEKVQYDSRTYNVFSAPXXXXXXXXXXXRVLIVQDLTEEEKFRSELDNVE 347 ++ R K + R S VL D+TE RSE+ +E Sbjct: 281 ENPQVENGRTLLKTAFCIRNLQTDSITGA----------VLTAHDITELALLRSEVGRME 330 Query: 348 RLTLVGQMAAGITHEIRNPMAVVRGFLQLMREKSPGEMDSYYQIVIEELDRANGIINDFL 407 RL+L+GQMAA ITHEIRNPMAV+RGF+QLMRE+SP +YY IV++ELDRAN II+DFL Sbjct: 331 RLSLIGQMAASITHEIRNPMAVIRGFVQLMRERSPENQQAYYGIVMDELDRANTIISDFL 390 Query: 408 SLAQSRISDKEPVQLHHIIKELAPLLWADANLRGQSVEXXXXXXXXXXXXXXREIKQLIL 467 SLAQ+R E LH II+E+ PLL ADANLRGQ++E +EIKQL+L Sbjct: 391 SLAQNRALTMEAGSLHDIIREMVPLLNADANLRGQTIEVELCDFVPAIQLNEKEIKQLLL 450 Query: 468 NLARNGMEAMEPKGELLLETHFNENKVELI--IQDTGSGIPQSQLEKLFVPFYTTKNQGT 525 NLARNGMEAM KG L + T + K E++ IQD G GI Q +++F PF++TK QGT Sbjct: 451 NLARNGMEAMSEKGRLSIHTSYIVEKEEIVLRIQDQGVGISDEQKQRIFDPFFSTKTQGT 510 Query: 526 GLGLPLCLSIAERHHGSIRVESQVGKGTAFIVSF 559 GLGLPLC+SIAERH+G I VES+ G GT FIVSF Sbjct: 511 GLGLPLCVSIAERHNGRINVESEQGVGTTFIVSF 544 >C1TEW0.1 C1TEW0_9FIRM PAS domain S-box protein Length = 906 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/303 (39%), Positives = 179/303 (59%), Gaps = 8/303 (2%) Query: 260 GITREAIVGQQAERLLLQ--EINGEALKRMKDSGFSKQRYNEKVQYDSRTYNVFSAPXXX 317 G+ E +VG + L Q +G +K + +SG S+++ E + D + + V + P Sbjct: 599 GLAPERLVGHRCYELWKQVEPCDGCPVKELLESGQSQEK--EVIGPDGKDWLVRANPVYD 656 Query: 318 XXXXXXXXRVLIVQDLTEEEKFRSELDNVERLTLVGQMAAGITHEIRNPMAVVRGFLQLM 377 V + +++ ++ E+ ++RL L+G+MAAGI HEIRNPM VRGFLQ+M Sbjct: 657 GNRNVIGT-VQVALEISHRKQLEQEIARLDRLNLIGEMAAGIGHEIRNPMTTVRGFLQMM 715 Query: 378 REKSPG-EMDSYYQIVIEELDRANGIINDFLSLAQSRISDKEPVQLHHIIKELAPLLWAD 436 EK+ + YY ++IEELDRAN II ++LSLA+++ + + L+ I+ L PL+ A Sbjct: 716 AEKNDCLKYKQYYDLMIEELDRANSIITEYLSLAKNKCVNLKIQSLNQILDVLYPLIQAT 775 Query: 437 ANLRGQSVEXXXXXXXXXXXXXXREIKQLILNLARNGMEAMEPKGELLLETHFNENKVEL 496 A +R +EI+QLILNL+RNG+EAM P G+L+++T KV L Sbjct: 776 A-MREDKFIVLSLGDVPNLLLDEKEIRQLILNLSRNGLEAMSPGGKLIIKTMTCSGKVAL 834 Query: 497 IIQDTGSGIPQSQLEKLFVPFYTTKNQGTGLGLPLCLSIAERHHGSIRVESQVGKGTAFI 556 ++QD GSGI ++KL PF+TTKN GTGLGL +C SIA RH +++VES GT F Sbjct: 835 VVQDEGSGIRPEIIKKLGTPFFTTKNNGTGLGLSVCYSIANRHKATLKVESN-NMGTTFS 893 Query: 557 VSF 559 V F Sbjct: 894 VWF 896 >A5D1A7.1 A5D1A7_PELTS Sensor protein EC=2.7.13.3 Length = 546 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/232 (43%), Positives = 153/232 (65%), Gaps = 3/232 (1%) Query: 329 IVQDLTEEEKFRSELDNVERLTLVGQMAAGITHEIRNPMAVVRGFLQLM-REKSPGEMDS 387 + +D+T ++ E+ +E+L L+G+MAAGI HEIRNPM VRGFLQL+ +K + Sbjct: 313 VAEDVTGRKQMEKEMARLEQLNLIGEMAAGIGHEIRNPMTTVRGFLQLLCGKKEFSKYRE 372 Query: 388 YYQIVIEELDRANGIINDFLSLAQSRISDKEPVQLHHIIKELAPLLWADANLRGQSVEXX 447 Y+ ++I+ELDRAN II ++LS+A+++ DK+ L+ ++ +APL+ ADA ++ + Sbjct: 373 YFSLMIDELDRANSIITEYLSMAKNKPVDKKMQSLNQLLSAMAPLIEADA-IKNNNYIKM 431 Query: 448 XXXXXXXXXXXXREIKQLILNLARNGMEAMEPKGELLLETHFNENKVELIIQDTGSGIPQ 507 +EI+QL+LNL RNG+EAM P L+++T+ +N+V L ++D G GI Sbjct: 432 ELSDIPDLLLDEKEIRQLVLNLVRNGLEAMPPGQNLIIKTYMEDNEVILSVKDQGHGIEP 491 Query: 508 SQLEKLFVPFYTTKNQGTGLGLPLCLSIAERHHGSIRVESQVGKGTAFIVSF 559 LEK+ PF+TTK+ GTGLGL +C SIA RH+ SI+VE+ KGT F + F Sbjct: 492 GVLEKIGTPFFTTKDNGTGLGLAVCYSIAARHNASIKVETS-PKGTTFYIKF 542 >A4J400.1 A4J400_DESRM Sensor protein EC=2.7.13.3 Length = 509 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 146/234 (62%), Gaps = 3/234 (1%) Query: 327 VLIVQDLTEEEKFRSELDNVERLTLVGQMAAGITHEIRNPMAVVRGFLQLMREKSP-GEM 385 + VQD+TE++ E+ +RL +VG+MAAGI+HE+RNPM VRGFLQ+++ K Sbjct: 275 IAFVQDITEKKILEEEMVRFDRLNMVGEMAAGISHEVRNPMTTVRGFLQMLQGKDDCSRY 334 Query: 386 DSYYQIVIEELDRANGIINDFLSLAQSRISDKEPVQLHHIIKELAPLLWADANLRGQSVE 445 Y+ ++I+ELDRAN II +FLS+ ++ S+ E ++ I+ L PLL ADA +G+ V+ Sbjct: 335 KDYFTLMIQELDRANSIITEFLSIGRNTPSNLEKQNINFIVNSLKPLLQADAFGQGKYVQ 394 Query: 446 XXXXXXXXXXXXXXREIKQLILNLARNGMEAMEPKGELLLETHFNENKVELIIQDTGSGI 505 +EI+Q+ILNL RNG+EAM G L++ T+ KV L +QD G GI Sbjct: 395 VETNKVPDLLLDS-KEIRQIILNLCRNGLEAMTSGGRLIIRTYLENRKVVLTVQDEGEGI 453 Query: 506 PQSQLEKLFVPFYTTKNQGTGLGLPLCLSIAERHHGSIRVESQVGKGTAFIVSF 559 +EKL PF+TTK GTGLGL +C SIA RH+ I +++ GT F V F Sbjct: 454 RSEVMEKLGTPFFTTKANGTGLGLSICYSIAARHNAVISIDTS-ANGTTFYVKF 506 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,165,860,645 Number of extensions: 127126894 Number of successful extensions: 465382 Number of sequences better than 1.0e-05: 23304 Number of HSP's gapped: 440786 Number of HSP's successfully gapped: 23364 Length of query: 582 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 441 Effective length of database: 1,732,333,088 Effective search space: 763958891808 Effective search space used: 763958891808 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)