BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0005.p (144 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D658.1 B1D658_9BACL Putative uncharacterized protein 247 2e-64 B3K552.1 B3K552_9BACI Putative uncharacterized protein 229 5e-59 C0ZJY0.1 C0ZJY0_BREBN Putative uncharacterized protein 175 1e-42 Q9KC58.1 Y1716_BACHD UPF0403 protein BH1716 169 1e-40 A7Z5T6.1 A7Z5T6_BACA2 YphP 166 8e-40 >B1D658.1 B1D658_9BACL Putative uncharacterized protein Length = 144 Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 114/144 (79%), Positives = 130/144 (90%) Query: 1 MSMSFNQYMKDSIQPMRDDLTSIGFKELLTPEEVEAVLPDSKGTTLVVVNSVCGCAAGQC 60 MSMSF +YM D +QPMRDDLT IG +EL TPEEV +PD+KGTTLVVVNSVCGCAAGQC Sbjct: 1 MSMSFERYMLDMVQPMRDDLTRIGIQELRTPEEVADAIPDAKGTTLVVVNSVCGCAAGQC 60 Query: 61 RPGVAQALQNEILPDHLYTVFAGQEKEATAKAREYFAPYPPSSPSIALMKDGQLVHFIER 120 RPGVA+ALQ++I PDHLYTVFAGQ+KEATAKAREYFAPYPPSSPSIALMKDG+LVHFIER Sbjct: 61 RPGVAEALQHDITPDHLYTVFAGQDKEATAKAREYFAPYPPSSPSIALMKDGELVHFIER 120 Query: 121 HGVEDRSAAEIAAELKDVFNRLCQ 144 H +E+RSAAEIAA+L + F+R C+ Sbjct: 121 HQIENRSAAEIAADLTEAFDRFCR 144 >B3K552.1 B3K552_9BACI Putative uncharacterized protein Length = 144 Score = 229 bits (585), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 115/144 (79%), Positives = 131/144 (90%) Query: 1 MSMSFNQYMKDSIQPMRDDLTSIGFKELLTPEEVEAVLPDSKGTTLVVVNSVCGCAAGQC 60 M MSF++YM+D +QPMRD+LTS+G KEL TPEEVE VLP++KGTTLVVVNSVCGCAAGQ Sbjct: 1 MGMSFDRYMRDMVQPMRDELTSLGIKELTTPEEVEEVLPEAKGTTLVVVNSVCGCAAGQA 60 Query: 61 RPGVAQALQNEILPDHLYTVFAGQEKEATAKAREYFAPYPPSSPSIALMKDGQLVHFIER 120 RPGVA AL+N++ PDHLYTVFAGQ+KEATAKAREYFAPYPPSSPSIAL+KDG+LVHFIER Sbjct: 61 RPGVAIALENQVKPDHLYTVFAGQDKEATAKAREYFAPYPPSSPSIALLKDGELVHFIER 120 Query: 121 HGVEDRSAAEIAAELKDVFNRLCQ 144 H VE+RSA EIAA+L D FNR CQ Sbjct: 121 HQVENRSAEEIAADLTDAFNRYCQ 144 >C0ZJY0.1 C0ZJY0_BREBN Putative uncharacterized protein Length = 142 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 102/138 (73%) Query: 3 MSFNQYMKDSIQPMRDDLTSIGFKELLTPEEVEAVLPDSKGTTLVVVNSVCGCAAGQCRP 62 MS+ YM IQPMRD+LT GF+EL T EEVE LP++KG TLVVVNSVCGCAAG RP Sbjct: 2 MSYEAYMSQVIQPMRDELTRNGFQELRTAEEVEQALPNAKGLTLVVVNSVCGCAAGLARP 61 Query: 63 GVAQALQNEILPDHLYTVFAGQEKEATAKAREYFAPYPPSSPSIALMKDGQLVHFIERHG 122 V +L + PD+++TVFAGQ+KEATAKAREYF Y PSSPS A+MKDG+++ IERH Sbjct: 62 AVVHSLNHATKPDNIFTVFAGQDKEATAKAREYFEGYAPSSPSFAIMKDGKIMTMIERHQ 121 Query: 123 VEDRSAAEIAAELKDVFN 140 +E+ A IA L + ++ Sbjct: 122 IENNELATIAGLLTNAYD 139 >Q9KC58.1 Y1716_BACHD UPF0403 protein BH1716 Length = 144 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/144 (56%), Positives = 99/144 (68%) Query: 1 MSMSFNQYMKDSIQPMRDDLTSIGFKELLTPEEVEAVLPDSKGTTLVVVNSVCGCAAGQC 60 MSM + YM+ ++PMR +LT GFKELLTPEEVE + ++GTTLVV+NSVCGCAAG Sbjct: 1 MSMHYEDYMRQVVEPMRRELTERGFKELLTPEEVEQYMESAEGTTLVVINSVCGCAAGLA 60 Query: 61 RPGVAQALQNEILPDHLYTVFAGQEKEATAKAREYFAPYPPSSPSIALMKDGQLVHFIER 120 RP +L ++ PDHL TVFAGQEKEATAK REY AP PPSSPS+AL K +LVHFI R Sbjct: 61 RPAAVTSLAHDKHPDHLVTVFAGQEKEATAKMREYLAPNPPSSPSMALFKGKELVHFIPR 120 Query: 121 HGVEDRSAAEIAAELKDVFNRLCQ 144 +E + L +N C+ Sbjct: 121 EEIEGAEPEALIRRLAMAYNEHCE 144 >A7Z5T6.1 A7Z5T6_BACA2 YphP Length = 144 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 81/144 (56%), Positives = 101/144 (70%), Gaps = 1/144 (0%) Query: 1 MSMSFNQYMKDSIQPMRDDLTSIGFKELLTPEEVEAVLPDSKGTTLVVVNSVCGCAAGQC 60 MSM++ +YM+ + PMR +LT GF+EL T EEVE+ + ++GTTLVVVNSVCGCAAG Sbjct: 1 MSMAYEEYMRQLVVPMRRELTGAGFQELTTAEEVESFMEQAEGTTLVVVNSVCGCAAGLA 60 Query: 61 RPGVAQA-LQNEILPDHLYTVFAGQEKEATAKAREYFAPYPPSSPSIALMKDGQLVHFIE 119 RP QA LQ+E PDH TVFAGQ+K+ATAK REYF PSSPS+AL+K ++VHFI Sbjct: 61 RPAATQAVLQHEKAPDHTVTVFAGQDKDATAKMREYFTGQEPSSPSMALLKGKEVVHFIP 120 Query: 120 RHGVEDRSAAEIAAELKDVFNRLC 143 RH +E EI L D F+ C Sbjct: 121 RHEIEGHDMEEIMKNLTDAFDAHC 144 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 820,643,573 Number of extensions: 29255826 Number of successful extensions: 81664 Number of sequences better than 1.0e-05: 280 Number of HSP's gapped: 81336 Number of HSP's successfully gapped: 280 Length of query: 144 Length of database: 3,060,696,203 Length adjustment: 107 Effective length of query: 37 Effective length of database: 2,052,647,598 Effective search space: 75947961126 Effective search space used: 75947961126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)