BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0002.p (132 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D656.1 B1D656_9BACL Holo-acyl-carrier-protein synthase EC=2.7.8.7 125 2e-27 B1Q9G6.1 B1Q9G6_CLOBO Holo-synthase EC=2.7.8.7 94 4e-18 C3KV34.1 C3KV34_CLOB6 Holo-(Acyl-carrier-protein) synthase EC=2.... 93 7e-18 C0ZK19.1 ACPS_BREBN Holo-[acyl-carrier-protein] synthase EC=2.7.8.7 90 6e-17 A7GKE4.1 ACPS_BACCN Holo-[acyl-carrier-protein] synthase EC=2.7.8.7 89 9e-17 >B1D656.1 B1D656_9BACL Holo-acyl-carrier-protein synthase EC=2.7.8.7 Length = 131 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/129 (51%), Positives = 84/129 (65%), Gaps = 1/129 (0%) Query: 1 VIYGIGHDVLEIGRVAGIANGSLGSRFTRRILTAQELVLXXXXX-XXXXEFIAGRFSAKE 59 +I GIGHDV ++ RV + G+RF RILT++E L +F AGRF+AKE Sbjct: 1 MIAGIGHDVTDMDRVEALLASKAGARFLGRILTSRERDLAGSYEGKRLAQFTAGRFAAKE 60 Query: 60 AVVKALGCGIGHTVGFQDIEILPDALGKPVASLSAEAWSRLRLPEQEYTIHLTITHSRGL 119 AVVKALGCGIG VGF DI+IL GKP +LS AW RL L + Y IH+TITH R + Sbjct: 61 AVVKALGCGIGAKVGFTDIDILRGPEGKPECTLSGSAWERLELVPERYRIHITITHDRSI 120 Query: 120 ASAFAVVER 128 ASA A++E+ Sbjct: 121 ASAVAIMEQ 129 >B1Q9G6.1 B1Q9G6_CLOBO Holo-synthase EC=2.7.8.7 Length = 126 Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 8/129 (6%) Query: 1 VIYGIGHDVLEIGRV--AGIANGSLGSRFTRRILTAQELVLXXXXXXXXXEFIAGRFSAK 58 +IYGIG D+ EI R+ A I N + FT ++ T E+ L EFIAGRF+AK Sbjct: 1 MIYGIGTDITEIRRIEKAIIRNKN----FTNKLFTKDEMALWEKKNFKL-EFIAGRFAAK 55 Query: 59 EAVVKALGCGIGHTVGFQDIEILPDALGKPVASLSAEAWSRLRLPEQEYTIHLTITHSRG 118 EAV KALG GI F+DIEI+ + LGKP L +A +R + Y IHL+I+H + Sbjct: 56 EAVSKALGTGI-RDFNFKDIEIINNELGKPQVILKPKAEDIIRKISKSYKIHLSISHEKE 114 Query: 119 LASAFAVVE 127 A A+A++E Sbjct: 115 YAIAYALLE 123 >C3KV34.1 C3KV34_CLOB6 Holo-(Acyl-carrier-protein) synthase EC=2.7.8.7 Length = 126 Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 4/127 (3%) Query: 1 VIYGIGHDVLEIGRVAGIANGSLGSRFTRRILTAQELVLXXXXXXXXXEFIAGRFSAKEA 60 +IYGIG D+ EI R+ + F ++ T E+ L EFIAGRF+AKEA Sbjct: 1 MIYGIGTDITEIRRIEKAI--TRNKNFINKLFTKNEMDLWEKKNFKL-EFIAGRFAAKEA 57 Query: 61 VVKALGCGIGHTVGFQDIEILPDALGKPVASLSAEAWSRLRLPEQEYTIHLTITHSRGLA 120 + KALG GI F+DIEI+ D LGKP L +A + +R + Y IHL+I+H + A Sbjct: 58 ISKALGTGI-RDFNFKDIEIINDELGKPQVILKPKAENIIRKISKSYKIHLSISHEKEYA 116 Query: 121 SAFAVVE 127 A+A++E Sbjct: 117 IAYALLE 123 >C0ZK19.1 ACPS_BREBN Holo-[acyl-carrier-protein] synthase EC=2.7.8.7 Length = 128 Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 3/128 (2%) Query: 1 VIYGIGHDVLEIGRVAGIANGSLGSRFTRRILTAQEL-VLXXXXXXXXXEFIAGRFSAKE 59 +I G G D++EI R+A + R + LT E +L E +AGRF+AKE Sbjct: 1 MIIGTGVDIVEIERIATLIKRQ--ERAIKHFLTTDEQQLLHGKSETRQAEMVAGRFAAKE 58 Query: 60 AVVKALGCGIGHTVGFQDIEILPDALGKPVASLSAEAWSRLRLPEQEYTIHLTITHSRGL 119 A KALG GIG + F D+EILP+ LGKPV ++ E +S+L L IH++I+HS+ Sbjct: 59 AGAKALGTGIGAVLSFLDMEILPNHLGKPVMTIKNEVYSKLDLDPTRVHIHVSISHSQSH 118 Query: 120 ASAFAVVE 127 A A +VE Sbjct: 119 AIAQVIVE 126 >A7GKE4.1 ACPS_BACCN Holo-[acyl-carrier-protein] synthase EC=2.7.8.7 Length = 119 Score = 89.4 bits (220), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/128 (43%), Positives = 69/128 (53%), Gaps = 14/128 (10%) Query: 1 VIYGIGHDVLEIGRVAGIANGSLGSRFTRRILTAQEL-VLXXXXXXXXXEFIAGRFSAKE 59 +I GIG D++E+ R+ + NG L F RILT E V EF+AGRF+AKE Sbjct: 1 MILGIGIDIIELNRIEKMINGKLN--FIERILTETERDVAAKLKGKRLVEFVAGRFAAKE 58 Query: 60 AVVKALGCGIGHTVGFQDIEILPDALGKPVASLSAEAWSRLRLPEQEYTIHLTITHSRGL 119 A KA+G GIG V F DIEI D GKPV EY +HL+I+HSR Sbjct: 59 AYSKAVGTGIGKEVSFLDIEIKNDQKGKPVL-----------FTNTEYIVHLSISHSREF 107 Query: 120 ASAFAVVE 127 A A V+E Sbjct: 108 AVAQVVLE 115 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 682,557,576 Number of extensions: 21912059 Number of successful extensions: 59157 Number of sequences better than 1.0e-05: 896 Number of HSP's gapped: 58595 Number of HSP's successfully gapped: 896 Length of query: 132 Length of database: 3,060,696,203 Length adjustment: 97 Effective length of query: 35 Effective length of database: 2,146,857,748 Effective search space: 75140021180 Effective search space used: 75140021180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)