BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0001.p (217 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D653.1 B1D653_9BACL A/G-specific adenine glycosylase 299 1e-79 B3K557.1 B3K557_9BACI A/G-specific adenine glycosylase 298 3e-79 Q67NN1.1 Q67NN1_SYMTH A/G-specific adenine glycosylase 258 2e-67 B7GII9.1 B7GII9_ANOFW A/G-specific adenine glycosylase 256 7e-67 C0Z646.1 C0Z646_BREBN Probable A/G-specific adenine glycosylase ... 255 2e-66 >B1D653.1 B1D653_9BACL A/G-specific adenine glycosylase Length = 398 Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 141/192 (73%), Positives = 164/192 (85%) Query: 10 TQQEAKLFFSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIER 69 ++EAK +FSR LL WY+ KRDLPWR +++PY +W+SEIMLQQTRVDTVIPY+ RF+ + Sbjct: 5 NKEEAKAYFSRELLTWYRRIKRDLPWRMNQDPYRVWVSEIMLQQTRVDTVIPYYERFMNK 64 Query: 70 FPTVESLADAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVG 129 FPTV +LA+APE EVLKCWEGLGYYSRARNLQ A++V E+YGG VP+D+ AV GLKGVG Sbjct: 65 FPTVRALAEAPEPEVLKCWEGLGYYSRARNLQAGAREVVERYGGIVPDDKVAVAGLKGVG 124 Query: 130 PYTAGAILSIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEAS 189 PYT GAI+SIAFNRPEPAVDGNVMRVLSRYF +EDDIAK TRV +E+LA LIPEG A Sbjct: 125 PYTTGAIMSIAFNRPEPAVDGNVMRVLSRYFCLEDDIAKPATRVGIEKLAVSLIPEGAAG 184 Query: 190 HFNQALMELGAL 201 FNQALMELGAL Sbjct: 185 DFNQALMELGAL 196 >B3K557.1 B3K557_9BACI A/G-specific adenine glycosylase Length = 382 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 141/189 (74%), Positives = 161/189 (85%) Query: 13 EAKLFFSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIERFPT 72 E K +FS+ LL+WY+ KRDLPWRRHR+PYYIW+SEIMLQQTRVDTVIPYF+RFIERFPT Sbjct: 5 EHKRYFSQELLDWYEINKRDLPWRRHRDPYYIWVSEIMLQQTRVDTVIPYFHRFIERFPT 64 Query: 73 VESLADAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVGPYT 132 ++SLADAPE++VLKCWEGLGYYSRARNLQ AA+QV EQY G +P+ +D V GLKG+GPYT Sbjct: 65 IQSLADAPEDDVLKCWEGLGYYSRARNLQAAARQVTEQYDGVMPSGKDEVSGLKGIGPYT 124 Query: 133 AGAILSIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEASHFN 192 +GAI SIAFN P AVDGNVMRVLSRYFLIE+DI K TR ME L L+P+G AS F Sbjct: 125 SGAIRSIAFNIPAAAVDGNVMRVLSRYFLIEEDIMKVKTRTKMEDLVLTLVPDGRASDFT 184 Query: 193 QALMELGAL 201 QALMELGAL Sbjct: 185 QALMELGAL 193 >Q67NN1.1 Q67NN1_SYMTH A/G-specific adenine glycosylase Length = 365 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 121/179 (67%), Positives = 146/179 (81%) Query: 22 LLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIERFPTVESLADAPE 81 LL+WY RDLPWRR R+PY+IW+SEIMLQQTRV+TVIPY+ R++ RFPT+E+LADAPE Sbjct: 5 LLDWYSASARDLPWRRTRDPYHIWVSEIMLQQTRVETVIPYYERWMARFPTLEALADAPE 64 Query: 82 EEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVGPYTAGAILSIAF 141 E+VLK WEGLGYYSRARNL AA++V +YGG VP+D DAV LKG+GPYTAGAILSIAF Sbjct: 65 EQVLKAWEGLGYYSRARNLHAAAREVVARYGGTVPDDPDAVASLKGIGPYTAGAILSIAF 124 Query: 142 NRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEASHFNQALMELGA 200 NRP PAVDGNV+RV++R + I DDIA+ TR +E L +IP+ FNQALM+LGA Sbjct: 125 NRPVPAVDGNVLRVIARLYAIVDDIAQLATRRTIEELVRAMIPQDRPGDFNQALMDLGA 183 >B7GII9.1 B7GII9_ANOFW A/G-specific adenine glycosylase Length = 373 Score = 256 bits (655), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 118/184 (64%), Positives = 147/184 (79%) Query: 18 FSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIERFPTVESLA 77 F L++W++ ++RDLPWR+ ++PY IW+SE+MLQQTRVDTVIPYF +FIE+FPT+++LA Sbjct: 30 FQHDLIDWFRTEQRDLPWRKDKDPYKIWVSEVMLQQTRVDTVIPYFYQFIEKFPTLDALA 89 Query: 78 DAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVGPYTAGAIL 137 DA EEEVLK WEGLGYYSR RNL A K+VKE+YGG+VP ++ LKGVGPYT GA+L Sbjct: 90 DAKEEEVLKAWEGLGYYSRVRNLHAAVKEVKEKYGGRVPASKEQFSSLKGVGPYTTGAVL 149 Query: 138 SIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEASHFNQALME 197 SIA+ PEPAVDGNVMRVLSR F I DDIA+ TR E++ + +I + S FNQALME Sbjct: 150 SIAYGIPEPAVDGNVMRVLSRIFYITDDIARASTRKKFEQIVSCIISHDDPSDFNQALME 209 Query: 198 LGAL 201 LGAL Sbjct: 210 LGAL 213 >C0Z646.1 C0Z646_BREBN Probable A/G-specific adenine glycosylase EC=3.2.2.- Length = 368 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/184 (65%), Positives = 146/184 (79%) Query: 18 FSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIERFPTVESLA 77 F++ LL WY QKRDLPWR +++PY IW+SEIMLQQTRV+TV PY+ F+E+FPTV LA Sbjct: 21 FAQDLLAWYDSQKRDLPWRINKDPYRIWVSEIMLQQTRVETVKPYYANFMEKFPTVSELA 80 Query: 78 DAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVGPYTAGAIL 137 APEE+VLK WEGLGYYSRARNLQ AA++V +YGG VP+ + + LKGVGPYTAGAIL Sbjct: 81 KAPEEDVLKAWEGLGYYSRARNLQAAAREVTVRYGGVVPDTPEEIATLKGVGPYTAGAIL 140 Query: 138 SIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEASHFNQALME 197 SIA+ + EPAVDGNVMRV SR + DDIAK TR+ +E L ++IPEG A FNQALME Sbjct: 141 SIAYEKAEPAVDGNVMRVFSRLLYLTDDIAKPATRIKIEHLVRQVIPEGRAGDFNQALME 200 Query: 198 LGAL 201 LGA+ Sbjct: 201 LGAM 204 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,207,925,697 Number of extensions: 48185209 Number of successful extensions: 112018 Number of sequences better than 1.0e-05: 2869 Number of HSP's gapped: 110418 Number of HSP's successfully gapped: 2869 Length of query: 217 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 87 Effective length of database: 1,835,964,253 Effective search space: 159728890011 Effective search space used: 159728890011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)