BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0301.0034.p
         (82 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBJ3.1 B3KBJ3_9BACI Putative uncharacterized protein                125   1e-27
A4ISH3.1 A4ISH3_GEOTN Putative uncharacterized protein                124   3e-27
B4BMX4.1 B4BMX4_9BACI Putative uncharacterized protein                124   3e-27
A7GUG6.1 A7GUG6_BACCN Putative uncharacterized protein                122   1e-26
C2ZWC3.1 C2ZWC3_BACCE Putative uncharacterized protein                121   2e-26

>B3KBJ3.1 B3KBJ3_9BACI Putative uncharacterized protein
          Length = 100

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 70/82 (85%)

Query: 1   VKLPKTTLLSISTGKGYIMCGALDVGLLNETLSDRGIIAARAVGVRTLPQLLAAPLESVT 60
           VKLPKTTLL++ T +GYIMCGALDVGLLNE L+DR IIA RAVGVRTL QLL APLESVT
Sbjct: 19  VKLPKTTLLAVYTSRGYIMCGALDVGLLNEQLADRKIIAGRAVGVRTLEQLLEAPLESVT 78

Query: 61  IEAEKLGIVPGMTGADALLHML 82
           +EAEK GI PG+ G DA+L M+
Sbjct: 79  LEAEKWGIHPGLAGKDAILRMI 100


>A4ISH3.1 A4ISH3_GEOTN Putative uncharacterized protein
          Length = 100

 Score =  124 bits (311), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 68/81 (83%)

Query: 1  VKLPKTTLLSISTGKGYIMCGALDVGLLNETLSDRGIIAARAVGVRTLPQLLAAPLESVT 60
          VKLPKT LL++++ KGYIMCGALDV LLNE L DRGIIA RAVGVRT+ QLL APLESVT
Sbjct: 19 VKLPKTNLLAVASDKGYIMCGALDVALLNEKLRDRGIIAGRAVGVRTIEQLLEAPLESVT 78

Query: 61 IEAEKLGIVPGMTGADALLHM 81
          I AE+LGI PGM G DALL M
Sbjct: 79 IAAEQLGIKPGMKGKDALLKM 99


>B4BMX4.1 B4BMX4_9BACI Putative uncharacterized protein
          Length = 100

 Score =  124 bits (311), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 68/81 (83%)

Query: 1  VKLPKTTLLSISTGKGYIMCGALDVGLLNETLSDRGIIAARAVGVRTLPQLLAAPLESVT 60
          VKLPKT LL++++ KGYIMCGALDV LLNE L DRGIIA RAVGVRT+ QLL APLESVT
Sbjct: 19 VKLPKTNLLAVASDKGYIMCGALDVALLNEKLRDRGIIAGRAVGVRTIEQLLEAPLESVT 78

Query: 61 IEAEKLGIVPGMTGADALLHM 81
          I AE+LGI PGM G DALL M
Sbjct: 79 IAAEQLGIKPGMKGKDALLKM 99


>A7GUG6.1 A7GUG6_BACCN Putative uncharacterized protein
          Length = 100

 Score =  122 bits (305), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 67/82 (81%)

Query: 1   VKLPKTTLLSISTGKGYIMCGALDVGLLNETLSDRGIIAARAVGVRTLPQLLAAPLESVT 60
           VKLPKT LL+I + KGYIMCGALDVGLLNE L DRG++A RAVGVRT+ QLL APLESVT
Sbjct: 19  VKLPKTNLLAIMSDKGYIMCGALDVGLLNEKLKDRGVVAGRAVGVRTIEQLLEAPLESVT 78

Query: 61  IEAEKLGIVPGMTGADALLHML 82
            EAEKLGI  G  G DALL M+
Sbjct: 79  TEAEKLGITAGTIGKDALLKMI 100


>C2ZWC3.1 C2ZWC3_BACCE Putative uncharacterized protein
          Length = 100

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 66/81 (81%)

Query: 1  VKLPKTTLLSISTGKGYIMCGALDVGLLNETLSDRGIIAARAVGVRTLPQLLAAPLESVT 60
          VKLPKT LL++ + KGYIMCGALDVGLLNE L DRGIIA RAVGVRT+ QLL APLESVT
Sbjct: 19 VKLPKTNLLAVMSDKGYIMCGALDVGLLNEKLGDRGIIAGRAVGVRTIEQLLEAPLESVT 78

Query: 61 IEAEKLGIVPGMTGADALLHM 81
          IEAE LGI  G  G DALL M
Sbjct: 79 IEAEALGITAGTIGKDALLKM 99


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.138    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 450,991,309
Number of extensions: 14912727
Number of successful extensions: 40131
Number of sequences better than 1.0e-05: 101
Number of HSP's gapped: 40136
Number of HSP's successfully gapped: 101
Length of query: 82
Length of database: 3,060,696,203
Length adjustment: 52
Effective length of query: 30
Effective length of database: 2,570,803,423
Effective search space: 77124102690
Effective search space used: 77124102690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)