BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0301.0033.p
         (183 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBJ2.1 B3KBJ2_9BACI Putative uncharacterized protein                159   1e-37
B1DKH5.1 B1DKH5_9BACL Putative uncharacterized protein                 99   1e-19

>B3KBJ2.1 B3KBJ2_9BACI Putative uncharacterized protein
          Length = 179

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 115/172 (66%), Gaps = 9/172 (5%)

Query: 18  DGNYLFNVDILINARTNPLALQYLLEILNSNDKITDFNINSGLELGRTIDHLLRSAKLAL 77
           D  +LFNVDIL+ + +N LALQYLLE+LN   ++ DF I SG+ELG  I+ L+++ K ++
Sbjct: 9   DNGFLFNVDILVKSPSNALALQYLLEMLNDKAEVVDFRIKSGMELGEIINTLVQAKKDSV 68

Query: 78  KHESA---AAVQVPVKLPVKPTDKQAGKPVSGSIPADAPGETPA---DAYGKIRLYIQNN 131
              ++   A+     + P  P      K ++ S P   P +TP    D +  I++Y ++N
Sbjct: 69  ISNASRKMASSTTQHEKPAPPAISSPEKKIAASAP---PVQTPLAGNDPFEWIKVYSKDN 125

Query: 132 QLVRLRANRHGKQVSMPCRILNFDEAANSISVYHVDEKQVYTFKLNEIDEFS 183
           +LVRL  NRHGKQ S+PCRILN+DE+   ++VYHVDEKQVYTFKLNEIDEFS
Sbjct: 126 RLVRLTTNRHGKQTSLPCRILNYDESNFLVNVYHVDEKQVYTFKLNEIDEFS 177


>B1DKH5.1 B1DKH5_9BACL Putative uncharacterized protein
          Length = 170

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 25/173 (14%)

Query: 20  NYLFNVDILINARTNPLALQYLLEILNSNDKITDFNINSGLELGRTIDHLLRSAKLALKH 79
           +Y+F V++L+   +N  AL+ LL+ LN      D+ I +G++LG+ ID          K 
Sbjct: 11  SYVFQVELLVEGDSNAAALEKLLKSLNQG-AYADYRILNGIQLGQLIDQR--------KT 61

Query: 80  ESAAAVQVPVKLPVKPTDKQAGKP---------VSGSIPADAPGETPADAYGKIRLYIQN 130
           E   +  VPV    K     A  P         VS  +PA + G         IR ++++
Sbjct: 62  ELPGSQPVPVPRAAKSAAPAAPAPVPSTASVAFVSSVVPASSNG------LDSIRAFMKS 115

Query: 131 NQLVRLRANRH-GKQVSMPCRILNFDEAANSISVYHVDEKQVYTFKLNEIDEF 182
           N+L+RL  N+  G ++S+PCRILN DE  N I+VYHVDEKQVYTF+LNEI++F
Sbjct: 116 NKLIRLIVNKGLGIKLSIPCRILNIDEEGNLITVYHVDEKQVYTFRLNEIEDF 168


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,069,527,930
Number of extensions: 42132184
Number of successful extensions: 115314
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 115312
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 56
Effective length of database: 1,864,227,298
Effective search space: 104396728688
Effective search space used: 104396728688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)