BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0301.0032.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBJ1.1 B3KBJ1_9BACI Putative uncharacterized protein                 99   2e-19
B1DKH7.1 B1DKH7_9BACL Putative uncharacterized protein                 81   4e-14
Q2YA87.1 Q2YA87_NITMU Putative uncharacterized protein                 74   5e-12
Q62P66.1 Q62P66_BACLD YwdK                                             71   3e-11
Q65DP3.1 Q65DP3_BACLD YwdK                                             71   3e-11

>B3KBJ1.1 B3KBJ1_9BACI Putative uncharacterized protein
          Length = 125

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 65/120 (54%)

Query: 1   MAWGALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQWGE 60
           +AWG++L  LSV IGAFGAH+L+ +IS D L  YETGVHYHM                GE
Sbjct: 6   IAWGSILMALSVAIGAFGAHMLEDIISPDELATYETGVHYHMIHGLAVLITGIVAKVLGE 65

Query: 61  RSXXXXXXXXXXXXXXXXXXXXYALSITGIKVLGAITPLGGVCFLAGWLCLAWEALSRNK 120
                                 Y LSI+GIK LGAITP+GGV F+AGWL L   ALSR  
Sbjct: 66  SRKLFWAGALFIAGTVIFSGSLYVLSISGIKWLGAITPIGGVSFIAGWLILMSSALSRKN 125


>B1DKH7.1 B1DKH7_9BACL Putative uncharacterized protein
          Length = 127

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 65/119 (54%)

Query: 2   AWGALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQWGER 61
           A+GA+ A L+V +GAFGAH LK  +SED L+VYETGV YHM              + G+ 
Sbjct: 7   AYGAIGAALAVALGAFGAHGLKDTLSEDMLEVYETGVRYHMYHAIGLMLVALLADRIGDV 66

Query: 62  SXXXXXXXXXXXXXXXXXXXXYALSITGIKVLGAITPLGGVCFLAGWLCLAWEALSRNK 120
                                Y L+++ +K+LGAITPLGGV FLAGW C+A  AL   K
Sbjct: 67  KLVRVGARLLIAGIILFSGSLYVLALSDVKILGAITPLGGVAFLAGWGCIAAAALRSGK 125


>Q2YA87.1 Q2YA87_NITMU Putative uncharacterized protein
          Length = 125

 Score = 73.9 bits (180), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 54/110 (49%)

Query: 4   GALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQWGERSX 63
           GA+ A L V +GAFGAH LK  +S D L VY+TGV YH               Q+     
Sbjct: 10  GAVNAFLCVALGAFGAHGLKQTLSADMLAVYQTGVQYHFYHALGLIAVGLVLFQFPASKW 69

Query: 64  XXXXXXXXXXXXXXXXXXXYALSITGIKVLGAITPLGGVCFLAGWLCLAW 113
                              YALS+TGI+ LGAITPLGGV FL  W  LA+
Sbjct: 70  VALSGWLMCAGIVLFSASLYALSLTGIRGLGAITPLGGVSFLTAWALLAY 119


>Q62P66.1 Q62P66_BACLD YwdK
          Length = 123

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 57/113 (50%)

Query: 4   GALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQWGERSX 63
           GA+ AML+V +GAFGAH L+  I E YL++++TGV YHM              +      
Sbjct: 8   GAVNAMLAVALGAFGAHGLEGKIPEKYLQIWQTGVQYHMYHALGLIAVALIASKLAGAGS 67

Query: 64  XXXXXXXXXXXXXXXXXXXYALSITGIKVLGAITPLGGVCFLAGWLCLAWEAL 116
                              Y LS+T I VLGAITPLGGV F+A W+ +   A+
Sbjct: 68  VSAAGWLMFAGIVLFSGSLYVLSLTQISVLGAITPLGGVAFIAAWIMVVVSAV 120


>Q65DP3.1 Q65DP3_BACLD YwdK
          Length = 125

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 57/113 (50%)

Query: 4   GALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQWGERSX 63
           GA+ AML+V +GAFGAH L+  I E YL++++TGV YHM              +      
Sbjct: 10  GAVNAMLAVALGAFGAHGLEGKIPEKYLQIWQTGVQYHMYHALGLIAVALIASKLAGAGS 69

Query: 64  XXXXXXXXXXXXXXXXXXXYALSITGIKVLGAITPLGGVCFLAGWLCLAWEAL 116
                              Y LS+T I VLGAITPLGGV F+A W+ +   A+
Sbjct: 70  VSAAGWLMFAGIVLFSGSLYVLSLTQISVLGAITPLGGVAFIAAWIMVVVSAV 122


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.140    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 506,997,840
Number of extensions: 11281065
Number of successful extensions: 42094
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 42037
Number of HSP's successfully gapped: 69
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)