BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0301.0029.p
         (237 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBA9.1 B3KBA9_9BACI Putative uncharacterized protein                248   3e-64
B1D984.1 B1D984_9BACL Putative uncharacterized protein                196   1e-48

>B3KBA9.1 B3KBA9_9BACI Putative uncharacterized protein
          Length = 285

 Score =  248 bits (633), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 163/237 (68%)

Query: 1   VIQGTGIYVGQIDNHSVEIKTEEGATSFELGTGLEEAPEALSMDDPVVFEYVERSVEGDS 60
           + QGTG YVGQIDN+S+EI+T +G T+F LG G+++    L  ++ V +EY E+ VEG+ 
Sbjct: 49  IKQGTGTYVGQIDNNSIEIETADGPTAFRLGEGMDQIISKLQGEESVSYEYREQPVEGEE 108

Query: 61  SVLQRVLSKLEKSADSGSAAPSQAALPKSKSFSLTLEGMKEEKTAALAAGNGYSLYVFDI 120
            + Q +L KL    + G ++   A LP++K F L LEGMKE KTA LA G+GY+LY+FDI
Sbjct: 109 DLKQLILIKLTVDNEGGGSSSENAQLPETKDFELELEGMKETKTAKLAEGDGYALYIFDI 168

Query: 121 FTFDAKTGRLAMKVDPEYYAEITKLPSDFDLDSLKQEGEKELSSTGKVTALDQKERDRRM 180
           F+FDAKT RL M VD +YYAEITKLPSD++ D LK E EKEL+  GKV  ++  ER + M
Sbjct: 169 FSFDAKTNRLTMNVDQDYYAEITKLPSDYNADILKLEAEKELAEVGKVHEVEGSERHKVM 228

Query: 181 SGIRLYLTAMGNGLTREYAVKEIAGQGYVIRLNIPQREASEGFGPHVYTSLDSLVSQ 237
               +Y+   G GLT+ Y V E  GQGY+ R+N P RE SEGF  H +TSL S+V++
Sbjct: 229 KDASVYMIGEGEGLTKMYIVDEFDGQGYIFRVNNPHREPSEGFATHAFTSLSSIVNR 285


>B1D984.1 B1D984_9BACL Putative uncharacterized protein
          Length = 291

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/235 (42%), Positives = 145/235 (61%), Gaps = 3/235 (1%)

Query: 3   QGTGIYVGQIDNHSVEIKTEEGATSFELGTGLEEAPEALSMDDPVVFEYVERSVEGDSSV 62
           QG G++VG  D+H+VEI  +  A +++LG G + A  AL   D V FEY E ++EGD++ 
Sbjct: 60  QGKGVFVGLADSHTVEITVDGEAAAYQLGEGTDSAVAALKEGDNVSFEYTEAAIEGDATA 119

Query: 63  LQRVLSKLEKSADSGSAAPSQAALPKSKSFSLTLEGMKEEKTAALAAGNGYSLYVFDIFT 122
               ++K+EK+A      P+   LP +K F   LEG +E +T  LA G+GY+LY+F+ F 
Sbjct: 120 KLLTITKIEKAAGD---TPAVNELPATKDFKFQLEGNEETRTGTLAKGDGYALYIFEQFK 176

Query: 123 FDAKTGRLAMKVDPEYYAEITKLPSDFDLDSLKQEGEKELSSTGKVTALDQKERDRRMSG 182
           FDA   +L M VD +YY EI+KLP  F LD +K + EKEL S G V ++DQK+    +  
Sbjct: 177 FDAAANKLIMNVDNDYYIEISKLPEGFKLDDVKADAEKELKSVGDVQSIDQKDSKSMIGD 236

Query: 183 IRLYLTAMGNGLTREYAVKEIAGQGYVIRLNIPQREASEGFGPHVYTSLDSLVSQ 237
           + L L A  N LT+E  VK + G  ++ ++N P  E +EGFGP  +TS+ S+ +Q
Sbjct: 237 VDLMLKAASNKLTKEVIVKTVDGTSFLFKVNQPVGEPTEGFGPLAFTSMGSIAAQ 291


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.130    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,326,440,487
Number of extensions: 53547060
Number of successful extensions: 123477
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 123476
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 105
Effective length of database: 1,817,122,223
Effective search space: 190797833415
Effective search space used: 190797833415
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)