BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0301.0024.p (267 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DD99.1 B1DD99_9BACL Sporulation protein YhbH 290 7e-77 B3KBI9.1 B3KBI9_9BACI Putative uncharacterized protein 276 1e-72 C1P7D1.1 C1P7D1_BACCO Sporulation protein YhbH 243 2e-62 P45742.2 YHBH_BACSU Stress response UPF0229 protein yhbH 242 3e-62 A4IKM6.1 A4IKM6_GEOTN Glycosyltransferase 240 1e-61 >B1DD99.1 B1DD99_9BACL Sporulation protein YhbH Length = 387 Score = 290 bits (743), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 138/207 (66%), Positives = 164/207 (79%), Gaps = 1/207 (0%) Query: 13 FVVSKEDWSLHRKGHQDQERHQQKVREAIKDNLPDLVTEENIIMSDGKQIVKVPIRSLDE 72 FVVS+EDWSLHRKG+QDQ RHQQKVREAIK NLPDLV+EE+I+MSDGKQ++KVPIRSLDE Sbjct: 9 FVVSQEDWSLHRKGYQDQARHQQKVREAIKQNLPDLVSEESIVMSDGKQVIKVPIRSLDE 68 Query: 73 YRIIYNFRKQKHVGQGDGESQVGDVLGRDSQSAH-PGKGDKAGDQPGQDTVXXXXXXXXX 131 +R +YN+ K KHVGQGDG+SQVGDVLG D Q+A PGKG+ AGDQPG+D + Sbjct: 69 FRFVYNYNKNKHVGQGDGDSQVGDVLGVDPQAAKGPGKGEGAGDQPGEDVIEAEISLAEL 128 Query: 132 XXXXXXXXXXPHLAPKTQEEIEVKSIVFNDIRKKGMMSNIDKKRTLLENLRRNASRGKPG 191 P L K ++++E K I FNDIRKKG+MSNIDKKRT++ENLRRNA+ G PG Sbjct: 129 ESMLFEELELPFLRQKDKDQLETKEIRFNDIRKKGIMSNIDKKRTIMENLRRNATSGTPG 188 Query: 192 IHSISPDDLRYKTWDDITVPHSNAVII 218 IH ISPDDLRYKTW++I P SNAVI+ Sbjct: 189 IHGISPDDLRYKTWEEIVRPQSNAVIL 215 >B3KBI9.1 B3KBI9_9BACI Putative uncharacterized protein Length = 215 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 139/198 (70%), Positives = 157/198 (79%) Query: 6 QSSGHSAFVVSKEDWSLHRKGHQDQERHQQKVREAIKDNLPDLVTEENIIMSDGKQIVKV 65 Q+ +FVVS+EDWSLHRKG+QDQ RHQ K+RE IK NLPDL+TEENII+SDGKQI+KV Sbjct: 2 QNEDALSFVVSREDWSLHRKGYQDQVRHQHKIREVIKRNLPDLITEENIILSDGKQIIKV 61 Query: 66 PIRSLDEYRIIYNFRKQKHVGQGDGESQVGDVLGRDSQSAHPGKGDKAGDQPGQDTVXXX 125 PIRSLDEYR IYN++KQKHVGQGDG+SQVGDVLGRD +A PGKG+ AGDQ GQD V Sbjct: 62 PIRSLDEYRFIYNYQKQKHVGQGDGDSQVGDVLGRDPSAAQPGKGESAGDQAGQDIVETE 121 Query: 126 XXXXXXXXXXXXXXXXPHLAPKTQEEIEVKSIVFNDIRKKGMMSNIDKKRTLLENLRRNA 185 P L PK +E+IE +SIVFNDIRKKG+MSNIDKKRT+LENLRRNA Sbjct: 122 VSLEELENMLFEELELPLLQPKDKEQIETESIVFNDIRKKGIMSNIDKKRTILENLRRNA 181 Query: 186 SRGKPGIHSISPDDLRYK 203 GKPGIH ISPDDLRYK Sbjct: 182 RDGKPGIHGISPDDLRYK 199 >C1P7D1.1 C1P7D1_BACCO Sporulation protein YhbH Length = 388 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/207 (55%), Positives = 150/207 (72%), Gaps = 1/207 (0%) Query: 13 FVVSKEDWSLHRKGHQDQERHQQKVREAIKDNLPDLVTEENIIMSDGKQIVKVPIRSLDE 72 FV+S+EDWSLHRKGH DQ RHQ+KV+EAI++NLPDL+TEE+IIMSDG+ +VK+PIRSLDE Sbjct: 9 FVLSQEDWSLHRKGHDDQVRHQEKVQEAIRNNLPDLITEESIIMSDGRDVVKIPIRSLDE 68 Query: 73 YRIIYNFRKQKHVGQGDGESQVGDVLGRD-SQSAHPGKGDKAGDQPGQDTVXXXXXXXXX 131 Y+I YN+ K KHVGQG G+S+VGD++ RD S PGKG AGDQPG+D Sbjct: 69 YKIRYNYDKNKHVGQGQGDSKVGDIIARDGSPEQGPGKGQGAGDQPGEDYYEAEVSLMEI 128 Query: 132 XXXXXXXXXXPHLAPKTQEEIEVKSIVFNDIRKKGMMSNIDKKRTLLENLRRNASRGKPG 191 P+L K ++E V++I FNDIRK G+M NIDKKRT++ +RNA GKP Sbjct: 129 EEALFSQLELPNLQRKERDENTVEAIEFNDIRKTGLMGNIDKKRTMMSAFKRNAMNGKPA 188 Query: 192 IHSISPDDLRYKTWDDITVPHSNAVII 218 H I P+DL+++TW+++ P S AV++ Sbjct: 189 FHPIVPEDLKFRTWNEVEKPESKAVVL 215 >P45742.2 YHBH_BACSU Stress response UPF0229 protein yhbH Length = 392 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 120/213 (56%), Positives = 149/213 (69%), Gaps = 4/213 (1%) Query: 8 SGHSAFVVSKEDWSLHRKGHQDQERHQQKVREAIKDNLPDLVTEENIIMSDGKQIVKVPI 67 SGH F++S+E+WSLHRKG DQ+RHQ+KV+EAIK+NLPDLVTEE+IIMS+GK +VK+PI Sbjct: 6 SGH--FLISEENWSLHRKGFDDQQRHQKKVQEAIKNNLPDLVTEESIIMSNGKDVVKIPI 63 Query: 68 RSLDEYRIIYNFRKQKHVGQGDGESQVGDVLGRDSQSAH--PGKGDKAGDQPGQDTVXXX 125 RSLDEY+I YN+ K KHVGQGDGESQVGDV+ RD PGKG AGDQ G+D Sbjct: 64 RSLDEYKIRYNYDKNKHVGQGDGESQVGDVVARDGSDKKQGPGKGQGAGDQAGEDYYEAE 123 Query: 126 XXXXXXXXXXXXXXXXPHLAPKTQEEIEVKSIVFNDIRKKGMMSNIDKKRTLLENLRRNA 185 P+L K ++ I I FNDIRK G+ NIDKKRT++ +RNA Sbjct: 124 VSLMDLEEALFKELELPNLQQKERDNIIHTDIEFNDIRKTGLTGNIDKKRTMMSAFKRNA 183 Query: 186 SRGKPGIHSISPDDLRYKTWDDITVPHSNAVII 218 GKP + I P+DL+YKTW+DIT P S AV++ Sbjct: 184 MSGKPSFYPIYPEDLKYKTWNDITKPESKAVVL 216 >A4IKM6.1 A4IKM6_GEOTN Glycosyltransferase Length = 385 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 113/208 (54%), Positives = 150/208 (72%), Gaps = 2/208 (0%) Query: 13 FVVSKEDWSLHRKGHQDQERHQQKVREAIKDNLPDLVTEENIIMSDGKQIVKVPIRSLDE 72 F+VSKEDWSLHRKG+ DQ+RHQ+KV+EAIK+NLPDL+TEE+IIMS+G+ ++K+PIRSLDE Sbjct: 5 FIVSKEDWSLHRKGYDDQKRHQEKVKEAIKNNLPDLITEESIIMSNGRDVIKIPIRSLDE 64 Query: 73 YRIIYNFRKQKHVGQGDGESQVGDVLGRD--SQSAHPGKGDKAGDQPGQDTVXXXXXXXX 130 Y+I YN+ K KHVGQG+G+SQVGDV+ RD + PGKG AGD PGQD Sbjct: 65 YKIRYNYEKNKHVGQGNGDSQVGDVVARDGSGEGKGPGKGQGAGDLPGQDYYEAEVSLME 124 Query: 131 XXXXXXXXXXXPHLAPKTQEEIEVKSIVFNDIRKKGMMSNIDKKRTLLENLRRNASRGKP 190 P+L K +++ V+ I FNDIR+ G+M NIDKKRT+L +RNA GKP Sbjct: 125 IEEAFFSQLELPNLKQKERDQNVVQHIEFNDIRRTGLMGNIDKKRTMLAAFKRNAMSGKP 184 Query: 191 GIHSISPDDLRYKTWDDITVPHSNAVII 218 G + I +DL++KTW+++ P S AV++ Sbjct: 185 GFYPIYREDLKFKTWNEVVKPESKAVVL 212 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,444,028,176 Number of extensions: 56729059 Number of successful extensions: 129243 Number of sequences better than 1.0e-05: 151 Number of HSP's gapped: 128975 Number of HSP's successfully gapped: 151 Length of query: 267 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 134 Effective length of database: 1,807,701,208 Effective search space: 242231961872 Effective search space used: 242231961872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)