BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0301.0011.p (345 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4G6.1 B3K4G6_9BACI Alanine racemase EC=5.1.1.1 524 e-147 B1DAP6.1 B1DAP6_9BACL Transcriptional regulator, LacI family EC=... 422 e-116 C3J2S9.1 C3J2S9_9BACI Transcriptional regulator, LacI family EC=... 310 1e-82 B7YBB5.1 B7YBB5_9BACI Transcriptional regulator, LacI family EC=... 310 1e-82 A4IKZ3.1 A4IKZ3_GEOTN Maltose operon transcriptional repressor 308 6e-82 >B3K4G6.1 B3K4G6_9BACI Alanine racemase EC=5.1.1.1 Length = 344 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/344 (73%), Positives = 296/344 (86%), Gaps = 1/344 (0%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 M+VTIKDVAK+AGVSPSTVSRVLS HPRIS ETSRKVKEIMEEMGY PN+MAKSLVSKTT Sbjct: 1 MSVTIKDVAKRAGVSPSTVSRVLSNHPRISRETSRKVKEIMEEMGYHPNIMAKSLVSKTT 60 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 SIC+ILPKPAEELF NLFFMELIRGIVTQ++RSGYDV++SSG NEKEE+E+VSRLL GR Sbjct: 61 ESICVILPKPAEELFLNLFFMELIRGIVTQANRSGYDVVLSSGGNEKEEVEAVSRLLNGR 120 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGRSDRYEDILSVDNDNIMASFDATNHLISM 180 RVDG ILLYSR+DD V+DFL+S YPFVLVGRS++Y D+LSVD DN+ A++DAT HLIS+ Sbjct: 121 RVDGAILLYSRQDDQVVDFLKSNNYPFVLVGRSEKYPDLLSVDTDNVQAAYDATKHLISL 180 Query: 181 GHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMNL 240 GH+RIGFVSGPPNLIVS+DR++GY KA+A++GLEMR EWIVEGEFLQ+SGYRAMSFFMNL Sbjct: 181 GHQRIGFVSGPPNLIVSQDRMKGYGKALADAGLEMRKEWIVEGEFLQESGYRAMSFFMNL 240 Query: 241 PNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXYH 300 P RPTALV VDD+VSFGV+RGL+EL YKVP+D++I+SFNN Y+ Sbjct: 241 PERPTALVIVDDIVSFGVVRGLHELGYKVPQDVSIISFNNISLTELSTPPLSSVDIGIYN 300 Query: 301 LGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESSMHSPVK 344 LGYTASQ LIQ+I+ DN +R++IPHRL++RESSM SP K Sbjct: 301 LGYTASQALIQTIRNDDN-TILPHRYIIPHRLMIRESSMFSPPK 343 >B1DAP6.1 B1DAP6_9BACL Transcriptional regulator, LacI family EC=5.1.1.1 Length = 344 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/338 (59%), Positives = 260/338 (76%), Gaps = 4/338 (1%) Query: 3 VTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTTNS 62 VTIKD+AK AGVSPSTVSRV+S HPRIS ETS +VK+IMEEMGY PN+MAKSLVSKTT + Sbjct: 2 VTIKDIAKAAGVSPSTVSRVVSNHPRISKETSARVKKIMEEMGYHPNVMAKSLVSKTTKT 61 Query: 63 ICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGRRV 122 + I+LP+PAEELF + FF EL+RGI+T S+R+GYD+L+++ + +E E++SRL+ GRRV Sbjct: 62 LAIMLPRPAEELFQDFFFGELLRGILTHSTRAGYDMLLTTATSAHDETETISRLVFGRRV 121 Query: 123 DGVILLYSRKDDAVIDFLESGGYPFVLVGRS-DRYEDILSVDNDNIMASFDATNHLISMG 181 DGVILL +R +D +I +L +P +L+GR+ + Y +++V+NDN+ A++DAT HLI G Sbjct: 122 DGVILLSARVNDPLIRYLHEQDFPSILIGRAGEEYSRVMTVNNDNVQAAYDATQHLIKQG 181 Query: 182 HERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMNLP 241 H RIGFVSGP NL VS DRLEGY+KAM +GL M++EWIVEGEFLQ+SG+RAMSF M LP Sbjct: 182 HSRIGFVSGPTNLTVSNDRLEGYKKAMREAGLPMQSEWIVEGEFLQESGFRAMSFIMGLP 241 Query: 242 NRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXYHL 301 RPT LV +DD+V+FGVLRGL E+ YKVP+D+++VSFNN Y L Sbjct: 242 ERPTGLVVIDDVVAFGVLRGLTEIGYKVPDDISLVSFNNIALSELATPPISSVDIGTYQL 301 Query: 302 GYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESSM 339 GYTASQ+LI+ IQ H + +IPHRLIVRESS+ Sbjct: 302 GYTASQLLIRQIQDEPIHQSHV---IIPHRLIVRESSV 336 >C3J2S9.1 C3J2S9_9BACI Transcriptional regulator, LacI family EC=5.1.1.1 Length = 339 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/339 (45%), Positives = 220/339 (64%), Gaps = 4/339 (1%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 MTVTIKDVAK+A V+PSTVSRV++ PRIS +T ++V+E+M+E+GY PN +A+SL S+ T Sbjct: 1 MTVTIKDVAKRANVAPSTVSRVIADSPRISEKTKQRVREVMKELGYHPNFIARSLASQAT 60 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 I I++P A++ N FF E+IRGI + Y + +S+G E + E V +L+GR Sbjct: 61 QVIGIVMPSSADQALQNPFFPEVIRGISKAAHEKRYALQMSTGEKENDIYERVVEMLQGR 120 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGRS-DRYEDILSVDNDNIMASFDATNHLIS 179 RVDGVILLYSR++D ++ +L G+PFV++G+ + E + VDNDN+ A DATN+LI+ Sbjct: 121 RVDGVILLYSRQNDKLMKYLLKHGFPFVVIGKPHQKAEQVTHVDNDNVQAGKDATNYLIA 180 Query: 180 MGHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMN 239 GHERI FV G P +V+ DR GY A++ +GL R E++V EFLQ+ G AM ++ Sbjct: 181 CGHERIAFVGGNPQYLVTVDRQNGYAAALSEAGLPYRPEYVVHEEFLQEGGQEAMKELLS 240 Query: 240 LPNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXY 299 LP PT LV DD+++ G+L+ L+E+ VPED++IVSFNN + Sbjct: 241 LPEPPTGLVVADDLMALGMLKTLDEMGLGVPEDVSIVSFNNTLLAEMSRPPLTSVDIGIF 300 Query: 300 HLGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESS 338 LGY A++ LI+ I P+ R +IPHRL+ R S Sbjct: 301 QLGYEAAKHLIEKITNPNEP---IKRIIIPHRLVERGSC 336 >B7YBB5.1 B7YBB5_9BACI Transcriptional regulator, LacI family EC=5.1.1.1 Length = 339 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/339 (45%), Positives = 220/339 (64%), Gaps = 4/339 (1%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 MTVTIKDVAK+A V+PSTVSRV++ PRIS +T ++V+E+M+E+GY PN +A+SL S+ T Sbjct: 1 MTVTIKDVAKRANVAPSTVSRVIADSPRISEKTKQRVREVMKELGYHPNFIARSLASQAT 60 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 I I++P A++ N FF E+IRGI + Y + +S+G E + E V +L+GR Sbjct: 61 QVIGIVMPSSADQALQNPFFPEVIRGISKAAHEKRYALQMSTGEKENDIYERVVEMLQGR 120 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGRS-DRYEDILSVDNDNIMASFDATNHLIS 179 RVDGVILLYSR++D ++ +L G+PFV++G+ + E + VDNDN+ A DATN+LI+ Sbjct: 121 RVDGVILLYSRQNDKLMKYLLKHGFPFVVIGKPHQKAEQVTHVDNDNVQAGKDATNYLIA 180 Query: 180 MGHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMN 239 GHERI FV G P +V+ DR GY A++ +GL R E++V EFLQ+ G AM ++ Sbjct: 181 CGHERIAFVGGNPQYLVTVDRQNGYAAALSEAGLPYRPEYVVHEEFLQEGGQEAMKELLS 240 Query: 240 LPNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXY 299 LP PT LV DD+++ G+L+ L+E+ VPED++IVSFNN + Sbjct: 241 LPEPPTGLVVADDLMALGMLKTLDEMGLGVPEDVSIVSFNNTLLAEMSRPPLTSVDIGIF 300 Query: 300 HLGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESS 338 LGY A++ LI+ I P+ R +IPHRL+ R S Sbjct: 301 QLGYEAAKHLIEKITNPNEP---IKRIIIPHRLVERGSC 336 >A4IKZ3.1 A4IKZ3_GEOTN Maltose operon transcriptional repressor Length = 339 Score = 308 bits (788), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 152/339 (44%), Positives = 220/339 (64%), Gaps = 4/339 (1%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 MTVTIKDVAK+A V+PSTVSRV++ PRIS +T ++V+E M+E+GY PN +A+SL S+ T Sbjct: 1 MTVTIKDVAKRANVAPSTVSRVIADSPRISEKTKQRVREAMKELGYHPNFIARSLASQAT 60 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 I I++P A++ N FF E+IRGI + Y + +S+G E + E V +L+GR Sbjct: 61 QVIGIVMPSSADQALQNPFFPEVIRGISKAAHEKRYALQMSTGEKESDIYERVIEMLQGR 120 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGRS-DRYEDILSVDNDNIMASFDATNHLIS 179 RVDGVILLYSR++D ++ +L+ G+PFV++G+ + E + VDNDN+ A DATN+LI Sbjct: 121 RVDGVILLYSRQNDKLMKYLQKHGFPFVVIGKPHQKAEQVTHVDNDNVQAGKDATNYLID 180 Query: 180 MGHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMN 239 GHERI FV G P V+ DR EGY +A+ +GL R E++V EFLQ+ G AM ++ Sbjct: 181 HGHERIAFVGGNPQYFVTADRQEGYEEALREAGLLYRPEYVVHEEFLQEGGREAMKELLS 240 Query: 240 LPNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXY 299 L PT LV DD+++ G+++ L+E+ +VPED++IVSFNN + Sbjct: 241 LAEPPTGLVVADDLMALGMVKTLDEIGLRVPEDVSIVSFNNTLLAEMSRPPLTSVDIGIF 300 Query: 300 HLGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESS 338 LGY A++ LI+ ++ P+ R +IPHRL+ R S Sbjct: 301 QLGYEAAKSLIEKVENPNEP---IKRIIIPHRLVERGSC 336 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,850,122,712 Number of extensions: 69386747 Number of successful extensions: 220315 Number of sequences better than 1.0e-05: 9172 Number of HSP's gapped: 203426 Number of HSP's successfully gapped: 9175 Length of query: 345 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 209 Effective length of database: 1,779,438,163 Effective search space: 371902576067 Effective search space used: 371902576067 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)