BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0301.0003.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6Y4.1 B3K6Y4_9BACI Sensor protein EC=2.7.13.3 257 7e-67 B3KDJ6.1 B3KDJ6_9BACI Sensor protein EC=2.7.13.3 234 4e-60 Q477W3.1 Q477W3_DECAR Sensor protein EC=2.7.13.3 233 1e-59 Q1NQF5.1 Q1NQF5_9DELT Sensor protein EC=2.7.13.3 230 1e-58 B4AX79.1 B4AX79_9CHRO Sensor protein EC=2.7.13.3 229 2e-58 >B3K6Y4.1 B3K6Y4_9BACI Sensor protein EC=2.7.13.3 Length = 1004 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 134/260 (51%), Positives = 175/260 (67%), Gaps = 1/260 (0%) Query: 3 KGMICGVVGSFSDITNEREILRXXXXXXXXXXXXXDFLAMMSHEIRTPMNGMIGMADXXX 62 +G G V F DIT+E+EI+R +FL MMSHE+RTPMNG+IGM + Sbjct: 734 QGERKGAVMVFRDITDEKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLS 793 Query: 63 XXXXXXXQRTYAEILRSSSHSLLKILNDILDFSKMEAGKMPLLSEKFDLREMMESVIDLF 122 Q+ Y IL SS SLL ILN+ILDFSK+E G M L E DLR ++E V+DLF Sbjct: 794 TTELDEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLF 853 Query: 123 TPKAEEKKLALRWWADTS-VPSMVTTDPSRLRQIIVNLVGNALKFTERGSVTLSVKNIQL 181 + KA+EK L+L + +++ VP ++ D RLRQ++VNL+ NA+KFT GS+TL+V+ ++ Sbjct: 854 SAKAKEKGLSLSFNINSANVPDVIIGDALRLRQVLVNLISNAIKFTHEGSITLNVEGLRR 913 Query: 182 PASPEYLLEFSVRDTGVGIADSKLNLLFQSFSQLHPFINRKYGGTGLGLAICKQLVELMG 241 + E+ L F V+DTG+GIA + LF SFSQLHP +NRKYGGTGLGLAI K+LVELMG Sbjct: 914 TGTQEFTLAFQVKDTGIGIAPELQHQLFTSFSQLHPSLNRKYGGTGLGLAISKKLVELMG 973 Query: 242 GTIFVESEEGRGSTFRFMLP 261 G I VES E GS+F F +P Sbjct: 974 GVIGVESRENVGSSFYFTIP 993 >B3KDJ6.1 B3KDJ6_9BACI Sensor protein EC=2.7.13.3 Length = 559 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 10/242 (4%) Query: 38 DFLAMMSHEIRTPMNGMIGMADXXXXXXXXXXQRTYAEILRSSSHSLLKILNDILDFSKM 97 +FLAMMSHEIRTPMNG+IGM D QR YA I+R+S+ +L+ I+NDILDFSKM Sbjct: 171 EFLAMMSHEIRTPMNGVIGMIDLLMDSELQDEQREYATIIRNSADALVNIINDILDFSKM 230 Query: 98 EAGKMPLLSEKFDLREMMESVIDLFTPKAEEKKLALRWWADTSVPSMVTTDPSRLRQIIV 157 E+GKM L FDL+ ++ V LF+ +A +K L L ++ + +PSMV D RLRQ++V Sbjct: 231 ESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIEDQIPSMVFGDMGRLRQVLV 290 Query: 158 NLVGNALKFTERGSVTLSVKNIQLPASPEYLLEFSVRDTGVGIADSKLNLLFQSFSQLHP 217 NLV NA+KFT G V L V ++ LEF+V+DTG+GI+ KL+ LF+ FSQL Sbjct: 291 NLVSNAVKFTNEGGVYLVV-SLAKAEENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDS 349 Query: 218 FINRKYGGTGLGLAICKQLVELMGGTIFVESEEGRGSTFRFML---------PFIKEEME 268 + R+YGGTGLGLAICK LV++MGG I V+S+EG G+TF F + P ++EE Sbjct: 350 SMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFTICVHTHEEEHPRLREEEH 409 Query: 269 AD 270 +D Sbjct: 410 SD 411 >Q477W3.1 Q477W3_DECAR Sensor protein EC=2.7.13.3 Length = 916 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/259 (46%), Positives = 163/259 (62%), Gaps = 5/259 (1%) Query: 4 GMICGVVGSFSDITNER----EILRXXXXXXXXXXXXXDFLAMMSHEIRTPMNGMIGMAD 59 G + G++G DIT+ + E+LR DFLA MSHEIRTPMNG+IGM D Sbjct: 368 GSVSGLLGIIVDITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTD 427 Query: 60 XXXXXXXXXXQRTYAEILRSSSHSLLKILNDILDFSKMEAGKMPLLSEKFDLREMMESVI 119 QR Y I +SS+ SLL ++NDILDFSK+EAGK+ + FDL ++ + Sbjct: 428 LALETALTEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADTL 487 Query: 120 DLFTPKAEEKKLALRWWADTSVPSMVTTDPSRLRQIIVNLVGNALKFTERGSVTLSVKNI 179 +A EK + + VP V DPSR+RQ++VNLVGNA+KFTE+G + L + Sbjct: 488 KPLALRAHEKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQGEIALQADLM 547 Query: 180 QLPASPEYLLEFSVRDTGVGIADSKLNLLFQSFSQLHPFINRKYGGTGLGLAICKQLVEL 239 QL + ++ F+VRDTG+GI+ K L+F +F+Q RKYGGTGLGL+IC++LVEL Sbjct: 548 QL-QNGHAVIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVEL 606 Query: 240 MGGTIFVESEEGRGSTFRF 258 MGGT+++ SE G+GSTF F Sbjct: 607 MGGTLWLHSEPGKGSTFHF 625 >Q1NQF5.1 Q1NQF5_9DELT Sensor protein EC=2.7.13.3 Length = 399 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/231 (50%), Positives = 156/231 (67%), Gaps = 1/231 (0%) Query: 38 DFLAMMSHEIRTPMNGMIGMADXXXXXXXXXXQRTYAEILRSSSHSLLKILNDILDFSKM 97 +FLA MSHEIRTPMNG+IGMA QR+YA+I+ SS +LL+++N ILDFSK+ Sbjct: 168 EFLANMSHEIRTPMNGVIGMASLLLAEDLSDEQRSYAQIIMSSGQALLELINQILDFSKI 227 Query: 98 EAGKMPLLSEKFDLREMMESVIDLFTPKAEEKKLALRWWADTSVPSMVTTDPSRLRQIIV 157 EAG++ L F RE++E V L P+A + +AL +P++V DP RLRQ+++ Sbjct: 228 EAGRLELDHRPFSPRELVEEVAVLLRPQAAAQNIALTSEVSPDIPAIVEGDPVRLRQVLL 287 Query: 158 NLVGNALKFTERGSVTLSVKNIQLPASPEYL-LEFSVRDTGVGIADSKLNLLFQSFSQLH 216 NLVGNA+KFTE G V + + + + L F+V+D+G+GI KL+LLFQ F Q+ Sbjct: 288 NLVGNAIKFTEVGGVAMELSPAPADPAAPHCSLHFAVKDSGIGIPVEKLDLLFQRFQQVD 347 Query: 217 PFINRKYGGTGLGLAICKQLVELMGGTIFVESEEGRGSTFRFMLPFIKEEM 267 RKYGGTGLGLAIC++LVELMGG I VESEEG+GSTF F +P E+ Sbjct: 348 GSTCRKYGGTGLGLAICRRLVELMGGEIGVESEEGKGSTFWFTVPLRTHEI 398 >B4AX79.1 B4AX79_9CHRO Sensor protein EC=2.7.13.3 Length = 1426 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/226 (50%), Positives = 157/226 (69%), Gaps = 3/226 (1%) Query: 38 DFLAMMSHEIRTPMNGMIGMADXXXXXXXXXXQRTYAEILRSSSHSLLKILNDILDFSKM 97 +F+AMMSHEIRTPMNG+IGM QR E +R+S +LL I+NDILDFSK+ Sbjct: 783 EFVAMMSHEIRTPMNGVIGMTGILLDTPLSELQRDCVETIRNSGDALLMIINDILDFSKI 842 Query: 98 EAGKMPLLSEKFDLREMMESVIDLFTPKAEEKKLALRWWADTSVPSMVTTDPSRLRQIIV 157 E+GK+ L + F+LRE +ES +DL PKA EK L L + D + P + D +RLRQI+V Sbjct: 843 ESGKLELEEQPFNLRESIESSLDLLAPKAAEKGLELAYIFDPNTPETILGDVTRLRQILV 902 Query: 158 NLVGNALKFTERGSVTLSVKNI---QLPASPEYLLEFSVRDTGVGIADSKLNLLFQSFSQ 214 NL+GN +KFTE+G V ++V + + +P Y +EF+V DTG+GIA + + LF++FSQ Sbjct: 903 NLIGNGIKFTEKGEVVVNVSSYPQEKSSTAPTYTIEFAVTDTGIGIAPERKDKLFKAFSQ 962 Query: 215 LHPFINRKYGGTGLGLAICKQLVELMGGTIFVESEEGRGSTFRFML 260 + R+YGGTGLGL I K+L +LMGG I V+S++G+GSTF+F + Sbjct: 963 VDSSTTRQYGGTGLGLVISKRLTQLMGGEISVDSQQGKGSTFKFTI 1008 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,392,127,923 Number of extensions: 52152258 Number of successful extensions: 212686 Number of sequences better than 1.0e-05: 27300 Number of HSP's gapped: 171369 Number of HSP's successfully gapped: 27580 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)