BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0299.0003.p
         (113 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK90.1 B3KK90_9BACI Putative uncharacterized protein                140   4e-32
B1DKC0.1 B1DKC0_9BACL Putative uncharacterized protein                119   1e-25

>B3KK90.1 B3KK90_9BACI Putative uncharacterized protein
          Length = 113

 Score =  140 bits (353), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 81/112 (72%)

Query: 1   MNRELQLDQQSLVSAWQERLPALMEDGDSFSVQGDAADPSSLLVHFNAAGRQAYSLDFRC 60
           MN EL +DQ +LV+AWQERLP +++ GD   V  D  DP+++ +H  AAGRQ YS DF+C
Sbjct: 1   MNSELNVDQSTLVNAWQERLPTILKPGDRAEVAADEGDPNAIRIHIGAAGRQEYSFDFQC 60

Query: 61  TYVDSREVAVSLIDAEEAGRQTDERSDAVQLLAQRYTRQIHECAQALQDLTN 112
           TYVDSREV V+LID E  G  TDER++ +Q +   YTR IHECAQ LQ +T+
Sbjct: 61  TYVDSREVKVALIDVERDGATTDERNENIQGMVGDYTRHIHECAQTLQQITH 112


>B1DKC0.1 B1DKC0_9BACL Putative uncharacterized protein
          Length = 114

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 75/111 (67%)

Query: 2   NRELQLDQQSLVSAWQERLPALMEDGDSFSVQGDAADPSSLLVHFNAAGRQAYSLDFRCT 61
           N +LQ+DQ  LV+AWQ  LP  ++D D+  V  D +DP++L V  + AG QAYS DF+  
Sbjct: 3   NDKLQIDQNQLVAAWQRTLPEWIKDADNCEVFADESDPNALRVTISTAGHQAYSFDFKVC 62

Query: 62  YVDSREVAVSLIDAEEAGRQTDERSDAVQLLAQRYTRQIHECAQALQDLTN 112
           YVDSREV V +ID ++     DER+D +Q L Q YTR +HECAQAL  LT+
Sbjct: 63  YVDSREVKVEVIDVDKNKVSIDERTDPMQQLIQDYTRHLHECAQALHQLTH 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 592,087,694
Number of extensions: 19450482
Number of successful extensions: 51796
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 51796
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 3,060,696,203
Length adjustment: 80
Effective length of query: 33
Effective length of database: 2,307,015,003
Effective search space: 76131495099
Effective search space used: 76131495099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)