BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0298.0004.p (250 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3E895.1 B3E895_GEOLS Putative uncharacterized protein 72 5e-11 C3AFV5.1 C3AFV5_BACMY Putative uncharacterized protein 65 6e-09 B8DLG1.1 B8DLG1_DESVM Putative uncharacterized protein 64 1e-08 C2VAP8.1 C2VAP8_BACCE Putative uncharacterized protein 63 2e-08 A2A1Y5.1 A2A1Y5_9BACT Putative uncharacterized protein SuGC13.HV... 60 2e-07 >B3E895.1 B3E895_GEOLS Putative uncharacterized protein Length = 305 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 9/218 (4%) Query: 18 LTFSDLETIANSPKIPVTIEDKGNRLLQYLYRHSGSAGDPVVIQPLSGSYNLTYSPNLQE 77 LT S ETI N + V +K LL+ + R + G V + P Y + ++ N E Sbjct: 75 LTNSIDETIKNFRQYSVL--EKQLLLLRAIERRTVYPGKEVTLNP-DTDYPIAWAVNCDE 131 Query: 78 LVYIIDKLINEQLLIREGMTFKLTDXXXXXXXXXXXXXXXXP-----CLILTAEKKELRL 132 Y+++ L L+ R + P + + K L Sbjct: 132 FEYLLESLEQRGLVTRSAIIGSSEVKISPRGWDNLDSEAWKPTFTDQVFVAMSFDKILDA 191 Query: 133 EWQEMLLPKIEQFGYLPRLLTQDSRHNH-DHDTFGLIADSRLIIADLTGQSPEVYFAAGY 191 W+E + IE+ GY + ++ + D I DS ++AD+T Q VYF AGY Sbjct: 192 IWEEGIKSAIEKAGYKAHRIDKEEHIDRIDAKIISDIKDSLFVVADVTQQKQGVYFEAGY 251 Query: 192 ALGLSIPVIWTVNSSAADELNVHVQAIRPIVWDTAEEL 229 A+GL+ PVIW V D+++ + IVW+T E L Sbjct: 252 AMGLNRPVIWCVKKDELDKIHFDTRQYNHIVWETPESL 289 >C3AFV5.1 C3AFV5_BACMY Putative uncharacterized protein Length = 320 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 12/208 (5%) Query: 33 PVTIEDKGNRLLQYLYRHSGSAGDPVVIQPLSGSYNLTYSPNLQELVYIIDKLINEQLL- 91 P + D+ + L L + S GDPV I+ S S +L E+ YI +L ++L+ Sbjct: 101 PDSASDRLDESLINLAKLSKFPGDPVYIRESDKSLFFVQSVHLLEMKYIATQLFQDELIE 160 Query: 92 --------IREGMTFKLTDXXXXXXXXXXXXXXXXPCLILTAEKKELRLEWQEMLLPKIE 143 +T + + ++ ++ + I+ Sbjct: 161 ISKLSAADFPAHITVTAKGWNRIAELEKGREADNKQAFVAMSFSPKMDGPYKNAITKAIK 220 Query: 144 QFGYLPRLLTQDSRHNHD--HDTFGLIADSRLIIADLTGQSPEVYFAAGYALGLSIPVIW 201 + GY P + +++ HN+D + I S+ +IAD TG VYF AGYA+GL VIW Sbjct: 221 EAGYQP-IRIEEAEHNNDITDEIIVKIRQSKFVIADFTGHRGGVYFEAGYAMGLGKTVIW 279 Query: 202 TVNSSAADELNVHVQAIRPIVWDTAEEL 229 T +++ + I W T EL Sbjct: 280 TCKDDDFKDIHFDTRQFSHIKWSTENEL 307 >B8DLG1.1 B8DLG1_DESVM Putative uncharacterized protein Length = 300 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 134 WQEMLLPKIEQFGYLP-RLLTQDSRHNHDHDTFGLIADSRLIIADLTGQSPEVYFAAGYA 192 + +++ I GYLP R+ ++ H D + I SR ++AD TG VY+ AG+A Sbjct: 187 YTDVMSEAIRDAGYLPHRVDQKEHAHRIDDEIISQIRRSRFVVADATGHRGGVYYEAGFA 246 Query: 193 LGLSIPVIWTVNSSAADELNVHVQAIRPIVWDTAE 227 +GL +PV WT DEL+ V+ I W++ + Sbjct: 247 MGLGLPVFWTCRQ--GDELHFDVRQYNCIFWNSND 279 >C2VAP8.1 C2VAP8_BACCE Putative uncharacterized protein Length = 320 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 10/207 (4%) Query: 33 PVTIEDKGNRLLQYLYRHSGSAGDPVVIQPLSGSYNLTYSPNLQELVYIIDKLINEQLL- 91 P + D+ + L L + S GDP+ I+ S S +L E+ YI ++L ++L+ Sbjct: 101 PDSASDRLDESLINLAKLSKFPGDPLYIRESDKSLFFVQSVHLLEMKYIANQLFQDELIE 160 Query: 92 --------IREGMTFKLTDXXXXXXXXXXXXXXXXPCLILTAEKKELRLEWQEMLLPKIE 143 +T + + ++ +Q + ++ Sbjct: 161 ISKLSAADFPAHITVTAKGWNRIAELEKGREADTKQVFVAMSFSPKMDSLYQNAIATAVK 220 Query: 144 QFGYLPRLLTQDSRHNH-DHDTFGLIADSRLIIADLTGQSPEVYFAAGYALGLSIPVIWT 202 + GY P + + +N D + I S+ IIAD T +VYF AGYA+GL PVIWT Sbjct: 221 EAGYEPIRIDKVEHNNKIDDEIIVKIRQSKFIIADFTEHRGDVYFEAGYAMGLGKPVIWT 280 Query: 203 VNSSAADELNVHVQAIRPIVWDTAEEL 229 + L+ + IVW EL Sbjct: 281 CRENDLANLHFDTRQYSHIVWKDEREL 307 >A2A1Y5.1 A2A1Y5_9BACT Putative uncharacterized protein SuGC13.HVF13.ORF13 Length = 307 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 146 GYLPRLLTQDSRHNH-DHDTFGLIADSRLIIADLTGQSPEVYFAAGYALGLSIPVIWTVN 204 GY P + + N D++ I S+ I+AD TG VYF AGYA+G IPV WT Sbjct: 204 GYDPIRIDRTEHINRIDNEIIRQINASKFIVADFTGHRGSVYFEAGYAMGSDIPVFWTCR 263 Query: 205 SSAADELNVHVQAIRPIVWDTAEELAVLLRQKL 237 L+ ++ I W+T +LA L ++ Sbjct: 264 KDDMSALHFDIRQFNCIDWETPADLASRLATRI 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,389,110,414 Number of extensions: 54699199 Number of successful extensions: 153295 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 153298 Number of HSP's successfully gapped: 7 Length of query: 250 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 118 Effective length of database: 1,817,122,223 Effective search space: 214420422314 Effective search space used: 214420422314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)