BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0298.0001.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K959.1 B3K959_9BACI Putative uncharacterized protein                142   1e-32
C4CRW9.1 C4CRW9_9SPHI Uncharacterized conserved protein               119   1e-25
Q0VRV6.1 Q0VRV6_ALCBS Putative uncharacterized protein                119   1e-25
C2FTG0.1 C2FTG0_9SPHI Putative uncharacterized protein                118   2e-25
B8FM90.1 B8FM90_DESAA Putative uncharacterized protein                117   4e-25

>B3K959.1 B3K959_9BACI Putative uncharacterized protein
          Length = 121

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 90/119 (75%), Gaps = 3/119 (2%)

Query: 4   MKQNIIDFCLEKKGAVPTHPFGPDWLVIKVEGKMFALIFENIASQPV--INLKCDPVIAA 61
           M+  +I +CL KK A   +PFGP  +V+KV GKMFALI    A + V  I+LKCDPVIA 
Sbjct: 1   MRSPLIAYCLSKKAAAEDYPFGPLPIVMKVGGKMFALI-TTTAGEKVSHISLKCDPVIAE 59

Query: 62  NLREQYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIAE 120
           NLREQ+D V+PGYH+NKKHWN++T+DGS+ E D+  MI HSYDLV+K LPK+ R +I++
Sbjct: 60  NLREQHDAVQPGYHLNKKHWNTVTVDGSLTEADLHDMIDHSYDLVLKSLPKAQRVAISQ 118


>C4CRW9.1 C4CRW9_9SPHI Uncharacterized conserved protein
          Length = 116

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 76/114 (66%), Gaps = 3/114 (2%)

Query: 6   QNIIDFCLEKKGAVPTHPFGPDWLVIKVEGKMFALIFENIASQPV-INLKCDPVIAANLR 64
           + + ++C+ K G   + PFG D LV KV GKMFAL+     SQP  INLKCDP +A  LR
Sbjct: 4   ETLREYCIGKPGVTESFPFGGDALVFKVGGKMFALL--ATESQPTTINLKCDPELAVQLR 61

Query: 65  EQYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESI 118
           E++  V PGYHMNK HWN+IT+DG V   D+   I HSY+LV K LPK+++  +
Sbjct: 62  EEHAAVAPGYHMNKTHWNTITIDGRVRSSDVQEWIDHSYELVKKSLPKAVQAQL 115


>Q0VRV6.1 Q0VRV6_ALCBS Putative uncharacterized protein
          Length = 132

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 81/120 (67%), Gaps = 2/120 (1%)

Query: 1   MKNMKQNII-DFCLEKKGAVPTHPFGPDWLVIKVEGKMFALIFENIASQPVINLKCDPVI 59
           M +M  +++ D+ L K  A+   PFGPD  V+KV GKMFA + E  + +  +NLKCDP  
Sbjct: 1   MIDMDVDVVRDYLLGKPEALEDFPFGPDVAVMKVRGKMFATLGEE-SGEGRMNLKCDPDQ 59

Query: 60  AANLREQYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIA 119
           A  LR+ +  V PGYHMNKKHWN+I LDGS+PE +I  MI HS+ LVV  LPK +RE +A
Sbjct: 60  ALALRDIFAAVLPGYHMNKKHWNTIKLDGSIPEGEIQRMIDHSFALVVGGLPKKVREGMA 119


>C2FTG0.1 C2FTG0_9SPHI Putative uncharacterized protein
          Length = 119

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 81/115 (70%), Gaps = 1/115 (0%)

Query: 6   QNIIDFCLEKKGAVPTHPFGPDWLVIKVEGKMFALIFENIASQPVINLKCDPVIAANLRE 65
           + + ++C+ KKGA    PFGPD LV KV GK+F L+  +   +   N+KCDP  A  LRE
Sbjct: 4   EQLREYCICKKGATEELPFGPDTLVFKVAGKVFLLVGLDQIGKLSFNVKCDPEYAVELRE 63

Query: 66  QYDN-VRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIA 119
           +Y++ V PGYHMNKKHWN++  + ++ ++++F +I HSYDL+VK LP  +RE+++
Sbjct: 64  KYESTVLPGYHMNKKHWNTVYANQALSDKELFALIDHSYDLIVKALPLKIRETLS 118


>B8FM90.1 B8FM90_DESAA Putative uncharacterized protein
          Length = 121

 Score =  117 bits (293), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 77/116 (66%), Gaps = 3/116 (2%)

Query: 6   QNIIDFCLEKKGAVPTHPFGPDWLVIKVEGKMFALIFENIASQPV-INLKCDPVIAANLR 64
           Q +  +  +K+GAV   PFGPD +V KV GKMFALI   + S P+ +NLKCDP  A  LR
Sbjct: 4   QTVTAYLDKKQGAVQDFPFGPDAMVYKVMGKMFALI--ALESSPLRMNLKCDPDHALALR 61

Query: 65  EQYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIAE 120
             Y +V PGYHMNK HWN++ LDGS+P   +F M+  SYDLVV  L K+ RE ++ 
Sbjct: 62  SIYPSVSPGYHMNKNHWNTVILDGSIPSDHLFDMMDDSYDLVVAGLKKADREKLSR 117


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 750,528,453
Number of extensions: 28051704
Number of successful extensions: 53097
Number of sequences better than 1.0e-05: 509
Number of HSP's gapped: 52758
Number of HSP's successfully gapped: 510
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)