BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0294.0009.p
         (140 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DK76.1 B1DK76_9BACL Response regulator receiver protein             209   5e-53
B3KKD7.1 B3KKD7_9BACI Response regulator receiver                     203   4e-51
C0Z840.1 C0Z840_BREBN Sporulation initiation phosphotransferase F     190   4e-47
A0RLC1.1 A0RLC1_BACAH Stage 0 sporulation protein F EC=2.7.-.-        177   3e-43
Q3EJ12.1 Q3EJ12_BACTI Sporulation initiation phosphotransferase ...   177   3e-43

>B1DK76.1 B1DK76_9BACL Response regulator receiver protein
          Length = 132

 Score =  209 bits (533), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/120 (85%), Positives = 114/120 (95%)

Query: 13  MEKKKVLIVDDQNGIRILLMEVFNSEGYATFQAANGKLALDIVRSESPDLVLLDMKIPGM 72
           MEKKK+LIVDDQNGIR+LLMEVF+SEGY TFQA+NG+LAL+IV++E+PDLVLLDMKIPGM
Sbjct: 1   MEKKKLLIVDDQNGIRVLLMEVFSSEGYNTFQASNGRLALEIVKAENPDLVLLDMKIPGM 60

Query: 73  DGLEILKHLKEINPAIKVIMMTAYGELDMIKEATKLGALMHFTKPFDIDEMRIAVNMHLN 132
           DGLEILKH+K IN  IKVIMMTAYGELDMIKEAT LGA+MHFTKPFDIDEMRIAVNM L+
Sbjct: 61  DGLEILKHVKAINRDIKVIMMTAYGELDMIKEATDLGAVMHFTKPFDIDEMRIAVNMQLH 120


>B3KKD7.1 B3KKD7_9BACI Response regulator receiver
          Length = 130

 Score =  203 bits (517), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/121 (82%), Positives = 109/121 (90%)

Query: 15  KKKVLIVDDQNGIRILLMEVFNSEGYATFQAANGKLALDIVRSESPDLVLLDMKIPGMDG 74
           K KVLIVDDQNGIRILL+EVF+SEGY TFQAANGK AL+IV+  +PDLVLLDMKIPGMDG
Sbjct: 6   KHKVLIVDDQNGIRILLVEVFSSEGYETFQAANGKAALEIVKMHAPDLVLLDMKIPGMDG 65

Query: 75  LEILKHLKEINPAIKVIMMTAYGELDMIKEATKLGALMHFTKPFDIDEMRIAVNMHLNNK 134
           LEILKH+K++NP IKVIMMTAYGELDMIKEAT LGALMHFTKPFDIDEMR AVNM L   
Sbjct: 66  LEILKHIKQMNPDIKVIMMTAYGELDMIKEATDLGALMHFTKPFDIDEMRQAVNMQLKGT 125

Query: 135 S 135
           +
Sbjct: 126 A 126


>C0Z840.1 C0Z840_BREBN Sporulation initiation phosphotransferase F
          Length = 124

 Score =  190 bits (482), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 105/121 (86%)

Query: 11  YGMEKKKVLIVDDQNGIRILLMEVFNSEGYATFQAANGKLALDIVRSESPDLVLLDMKIP 70
           +  + KKVL+VDDQ GIRILL EV   EGY TFQAANGK+AL+IV  ESPDLV+LDMKIP
Sbjct: 2   FDKQDKKVLVVDDQYGIRILLYEVLGKEGYKTFQAANGKMALEIVEKESPDLVILDMKIP 61

Query: 71  GMDGLEILKHLKEINPAIKVIMMTAYGELDMIKEATKLGALMHFTKPFDIDEMRIAVNMH 130
           GMDG+EILKH+K+IN  IKVIMMTAYGELDMIKEAT+LGAL HFTKPFDIDE+R+AV+  
Sbjct: 62  GMDGIEILKHIKKINQEIKVIMMTAYGELDMIKEATQLGALTHFTKPFDIDELRMAVHQQ 121

Query: 131 L 131
           L
Sbjct: 122 L 122


>A0RLC1.1 A0RLC1_BACAH Stage 0 sporulation protein F EC=2.7.-.-
          Length = 125

 Score =  177 bits (448), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 102/120 (85%)

Query: 12  GMEKKKVLIVDDQNGIRILLMEVFNSEGYATFQAANGKLALDIVRSESPDLVLLDMKIPG 71
           G+ + K+LIVDDQ GIR+LL EVF  EGY TFQAANG  ALDIV+ ++PDLV+LDMKIPG
Sbjct: 2   GVMEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPG 61

Query: 72  MDGLEILKHLKEINPAIKVIMMTAYGELDMIKEATKLGALMHFTKPFDIDEMRIAVNMHL 131
           MDG+EILKH+KEI+ +IKVI+MTAYGELDMI+EA  LGALMHF KPFDIDE+R AV   L
Sbjct: 62  MDGIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNEL 121


>Q3EJ12.1 Q3EJ12_BACTI Sporulation initiation phosphotransferase F EC=2.7.-.-
          Length = 125

 Score =  177 bits (448), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 102/120 (85%)

Query: 12  GMEKKKVLIVDDQNGIRILLMEVFNSEGYATFQAANGKLALDIVRSESPDLVLLDMKIPG 71
           G+ + K+LIVDDQ GIR+LL EVF  EGY TFQAANG  ALDIV+ ++PDLV+LDMKIPG
Sbjct: 2   GIMEGKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPG 61

Query: 72  MDGLEILKHLKEINPAIKVIMMTAYGELDMIKEATKLGALMHFTKPFDIDEMRIAVNMHL 131
           MDG+EILKH+KEI+ +IKVI+MTAYGELDMI+EA  LGALMHF KPFDIDE+R AV   L
Sbjct: 62  MDGIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNEL 121


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 786,755,361
Number of extensions: 28414407
Number of successful extensions: 161681
Number of sequences better than 1.0e-05: 27065
Number of HSP's gapped: 159249
Number of HSP's successfully gapped: 27163
Length of query: 140
Length of database: 3,060,696,203
Length adjustment: 104
Effective length of query: 36
Effective length of database: 2,080,910,643
Effective search space: 74912783148
Effective search space used: 74912783148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)