BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0034.p
         (407 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q185A1.1 Q185A1_CLOD6 Putative ABC transporter, permease permease     129   4e-28
C0C4D8.1 C0C4D8_9CLOT Putative uncharacterized protein                119   7e-25
A5KPQ9.1 A5KPQ9_9FIRM Putative uncharacterized protein                 98   1e-18
B0NKF3.1 B0NKF3_EUBSP Putative uncharacterized protein                 95   1e-17
C4G3H4.1 C4G3H4_ABIDE Putative uncharacterized protein                 69   9e-10

>Q185A1.1 Q185A1_CLOD6 Putative ABC transporter, permease permease
          Length = 429

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 174/391 (44%), Gaps = 43/391 (10%)

Query: 2   ISLIGKEMRMTLRSLVFYIFIIVACFFYFT------SYATSETWGELGPPAAGTPQNMGT 55
           ++L  KE +  L+S+V+YIFI+V  FFY +      S   S+     G P    PQ +  
Sbjct: 1   MNLFIKECKNILKSMVYYIFIVVLVFFYISQLGSSVSNDVSKNIPNDGNPLVA-PQKVEN 59

Query: 56  AE--------HPMYGWKQPGNAFELAKRMRTEIGWDLNSGTTTKYKIGFLVENKLDGEEK 107
            E        +P YG K+     ++       +  +    T T Y  G +   KLD  + 
Sbjct: 60  IEEYYSVHNQYP-YGQKESMKTEKVIPNATINLIREYQKNTYTTYPTGVVKYIKLDQNKT 118

Query: 108 GVLSDAIAKL---------------DVILQDPDKYTLDDVYKISDELNTQLGGNTMYK-R 151
             +   I ++               + I  D  K +L+   +I   ++  LGG + Y   
Sbjct: 119 KTIEKYIEEITGKSISEINSLWKTDESIKIDYSKVSLERFEEIMQRVDDILGGGSAYAFD 178

Query: 152 GVGDFGFPIESYDEAVKAQKVTLDLYRDKVEAGELLPGAARYFCDYLSLPAGIFPVFLSA 211
            +  FG    +YDEA+K    T+   +DKV  G      AR FCDY+ +   IFPVF++ 
Sbjct: 179 KLQRFGVVPVTYDEAMKNYNYTIQ--KDKVSNG-----YARIFCDYIGIVLSIFPVFVAV 231

Query: 212 FLLLRDRSSRMSELIYSRRVSPWAYVFSKFIAXXXXXXXXXXXXXXXXXWKTVEILGLDG 271
           F+ L+D+ SRM E+IYS++VS    V S++ A                    +      G
Sbjct: 232 FMSLKDKRSRMREIIYSKQVSSCKIVLSRYFALVFMMILPVLILGMKDLLPLIFFAKDKG 291

Query: 272 QTGEAAAIFLGYTAWWLLPTIWASVAFGMFGSMLFRLGIVPIALQVIWWFISVLP--LMG 329
            + +  A F+ YT WW+LPT+    A GM  ++L     V I +Q+IWW  S+    L G
Sbjct: 292 ISIDNLA-FIKYTLWWILPTLMIVTAVGMSITILTDTP-VAIIVQLIWWLYSINSTGLKG 349

Query: 330 SYGLYRLLIRFNSPDDYVLYKDWADEIALNR 360
            Y    L+IR NS  +  +     ++I +NR
Sbjct: 350 DYSTMGLMIRHNSVLNGDIIIQNFNQIMINR 380


>C0C4D8.1 C0C4D8_9CLOT Putative uncharacterized protein
          Length = 412

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 178/427 (41%), Gaps = 52/427 (12%)

Query: 3   SLIGKEMRMTLRSLVFYIFIIVACFFYFTSYATSETWGELGPPAAGTPQNMGTAEHPMYG 62
           SL  KE R T+RSL++++ +IV   F+F+     E  G+   PA G  +         YG
Sbjct: 4   SLFAKECRQTVRSLIYWLTVIVLTLFFFSQLGELEITGK---PAKGQEE---------YG 51

Query: 63  WKQPGNAFELAKRMRTEIGWDLNSGTTTKYKIGFLVENKLDGEEKGVLSDAIAKLD---- 118
            K   +   + K     +  +   GT + Y IGF    K   EE   + D + +      
Sbjct: 52  MKYSDDKQVIMKNTLGSLAEEYYGGTYSTYPIGFHKSVKPSKEENKRIGDIVKETTGITD 111

Query: 119 -VILQD--PDKYTLDDV------------------YKISDELNTQLGGNTMYKRGVGDFG 157
             +++D   + Y   DV                   K+  E++  LGG + Y   +    
Sbjct: 112 MTVIEDLMAEHYNTGDVIMTGLSVPPVKGLSYERFQKLMQEVDDMLGGGSSYGAEM---- 167

Query: 158 FPIESYDEAVKAQKVTLDLYRDKVEAGELLPGAARYFCDYLSLPAGIFPVFLSAFLLLRD 217
             +ES        +  ++ Y   VE   L  G AR FCDY+ +   I PVFL+    LRD
Sbjct: 168 --LESNAMEPMTYEDAMEEYNTLVEKDHLTGGYARLFCDYMGIMLSILPVFLAVTRGLRD 225

Query: 218 RSSRMSELIYSRRVSPWAYVFSKFIAXXXXXXXXXXXXXXXXXWKTVEILGLDGQTGEAA 277
           R ++M ELI  R+ S    + S++ A                  + +      G + +  
Sbjct: 226 RRAQMQELIAVRKASSAVIIASRYAAMLVMLMVPVLILSCFPLAECMSYAAEAGISIDHF 285

Query: 278 AIFLGYTAWWLLPTIWASVAFGMFGSMLFRLGIVPIALQVIWWFISVLPLM-----GSYG 332
           A F+ Y+  WLLP++  + A G+  ++L    +  + +Q +WWF+S+   M     G YG
Sbjct: 286 A-FVKYSFGWLLPSVMTAAAVGLVLTVLTDTAL-GVLVQGVWWFLSIFSSMSGMDGGKYG 343

Query: 333 LYRLLIRFNSPDDYVLYKDWADEIALNRSFYXXXXXXXXXXXXXXW-ERHRSRLDSAGAL 391
            +  + R N+  +Y  + D   ++A NR+ Y              + ++ R ++D  G +
Sbjct: 344 -WSFVPRHNTAGNYAGFHDNFAQLAANRALYAAVSVVLVLAAIWIYAKKRRGKMDIHGKI 402

Query: 392 SRKRSKK 398
           S  R  K
Sbjct: 403 SANRKNK 409


>A5KPQ9.1 A5KPQ9_9FIRM Putative uncharacterized protein
          Length = 464

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 15/224 (6%)

Query: 144 GGNTMYKRGVGDFGFPIESYDEAVKAQKVTLDLYRDKVEAGELLPGAARYFCDYLSLPAG 203
           G N   +  +  +G    +Y+EA+   + T+  Y DKV A       AR FCDY++   G
Sbjct: 206 GSNYSMENLLQYYGLAEMTYEEAMNEYEKTI--YDDKVSAA-----FARLFCDYMTRDLG 258

Query: 204 IFPVFLSAFLLLRDRSSRMSELIYSRRVSPWAYVFSKFIAXXXXXXXXXXXXXXXXXWKT 263
           ++PVFL     L+DR +RM+ELI  +++     +  +F+A                    
Sbjct: 259 LYPVFLVVIFWLKDRRNRMNELIDCKQIGTTKLITIRFLAMLAAVLLPITILSFESLIPL 318

Query: 264 VEILGLDGQTGEAAAI--FLGYTAWWLLPTIWASVAFGMFGSMLFRLGIVPIALQVIWWF 321
           +E      +TG A  +  FL Y  WWLLPT     + GMF ++L  + I  I +Q +WWF
Sbjct: 319 IE---FSAETGIAIDVFAFLKYIVWWLLPTAMIVTSSGMFLTILTSMPI-AILVQFVWWF 374

Query: 322 I--SVLPLMGSYGLYRLLIRFNSPDDYVLYKDWADEIALNRSFY 363
           I  S+  L G   ++ L+IR N      L K   + I LNR  +
Sbjct: 375 IDTSLTALSGDTKIFTLMIRHNLLRGSELIKQDFNLICLNRGLF 418


>B0NKF3.1 B0NKF3_EUBSP Putative uncharacterized protein
          Length = 412

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 168/427 (39%), Gaps = 54/427 (12%)

Query: 4   LIGKEMRMTLRSLVFYIFIIVACFFYFTSYATSETWGELGPPAAGTPQNMGTAEHPMYGW 63
           L  KE   T +SL +++ +I+   F+ +     +       P  G            YG 
Sbjct: 5   LFMKECSQTAKSLTYWLLVIIMVLFFASQMGQMDMEK---APEKGLED---------YGV 52

Query: 64  KQPGNAFELAKRMRTEIGWDLNSGTTTKYKIGFLVENKLDGEEKG----VLSDA------ 113
           K   +   +       +  +   G  T Y IGF+    L  EE+     +L +A      
Sbjct: 53  KPSKDKNIIMSATLGMLAGEYAEGRYTTYPIGFVKSVTLGKEEEAKVGEILKEATGLDKE 112

Query: 114 ---------------IAKLDVILQDPDKYTLDDVYKISDELNTQLGGNTMYK-RGVGDFG 157
                          I     +L+  +  +     +I  E++  LGG + Y    +GD G
Sbjct: 113 EIEEKIDEFYENSGGIITSRPVLEPLESLSYGRFEEIMQEVDDMLGGGSSYALDSLGDNG 172

Query: 158 FPIESYDEAVKAQKVTLDLYRDKVEAGELLPGAARYFCDYLSLPAGIFPVFLSAFLLLRD 217
              ++Y++AVK        Y + V+      G AR F DY+ +  GI PVFL+    LRD
Sbjct: 173 SEPKTYEDAVKE-------YEELVQKDGYTGGYARLFSDYMVIILGILPVFLAVTRELRD 225

Query: 218 RSSRMSELIYSRRVSPWAYVFSKFIAXXXXXXXXXXXXXXXXXWKTVEILGLDGQTGEAA 277
           R + M ELIY RR S    + S++++                    V      G + +  
Sbjct: 226 RRANMQELIYVRRSSSMTIIASRYLSMVVMILIPVFALSIQPLASCVTYAKTAGISVDYL 285

Query: 278 AIFLGYTAWWLLPTIWASVAFGMFGSMLFRLGIVPIALQVIWWFISVL---PLM--GSYG 332
           A F  Y A WLLPT+    A GM  + L    +  + +Q  WWF+S+      M  G YG
Sbjct: 286 A-FAKYIAGWLLPTVMVVTALGMLLTELTDTAL-AVLVQGAWWFVSIFMGAKTMDGGRYG 343

Query: 333 LYRLLIRFNSPDDYVLYKDWADEIALNRSFYXXXXXXXXXXXXXXW-ERHRSRLDSAGAL 391
            + L+ R N+  +Y  Y++   ++  NR  Y              + ++ + R++  G +
Sbjct: 344 -WNLIPRHNTILNYSGYQEGFSQLLTNRILYASLAVIAVSVTAWIYSQKRKGRMNIRGKI 402

Query: 392 SRKRSKK 398
           S  R  +
Sbjct: 403 SANRKSQ 409


>C4G3H4.1 C4G3H4_ABIDE Putative uncharacterized protein
          Length = 615

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 1/197 (0%)

Query: 186 LLPGAARYFCDYLSLPAGIFPVFLSAFLLLRDRSSRMSELIYSRRVSPWAYVFSKFIAXX 245
           L  G ARY  +YL + A +    +SA + ++DR SR+SE +Y+        V ++ ++  
Sbjct: 177 LSEGYARYLMNYLGILAVLLSAIISATVFIKDRKSRISEFLYTSNRKSKEIVITRLVSVI 236

Query: 246 XXXXXXXXXXXXXXXWKTVEILGLDGQTGEAAAIFLGYTAWWLLPTIWASVAFGMFGSML 305
                              +     G +  +   F+ Y   W++P+I  +V   +F  +L
Sbjct: 237 LPMLVVTLGITKIGMLPFYDSAREYGHS-LSDITFIKYWLIWIVPSIIIAVTLSVFLDIL 295

Query: 306 FRLGIVPIALQVIWWFISVLPLMGSYGLYRLLIRFNSPDDYVLYKDWADEIALNRSFYXX 365
           F    V + +Q I W +SV   +G+Y  +R++IRFNS      Y    + I +NR F   
Sbjct: 296 FNNIFVVVGVQFILWLLSVSAFIGNYEPWRIVIRFNSFGMSKYYDSIKNAIYVNRLFMVI 355

Query: 366 XXXXXXXXXXXXWERHR 382
                       ++R R
Sbjct: 356 LSILISTASVYLYDRAR 372


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,278,739,541
Number of extensions: 95494751
Number of successful extensions: 252788
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 252773
Number of HSP's successfully gapped: 5
Length of query: 407
Length of database: 3,060,696,203
Length adjustment: 138
Effective length of query: 269
Effective length of database: 1,760,596,133
Effective search space: 473600359777
Effective search space used: 473600359777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)