BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0033.p
         (210 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q184Z8.1 Q184Z8_CLOD6 Putative ABC transporter, permease protein       57   7e-07

>Q184Z8.1 Q184Z8_CLOD6 Putative ABC transporter, permease protein
          Length = 184

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 28  LLAVIPFFMDPGLMGQNEVARLGERLISFLGLI-IYPHLALLENGGIGEPLYAKQVRHPP 86
           +L +IP       + +   A   E  ++ +G++ + P  +L ++  I E + +K +    
Sbjct: 1   MLCMIPLIQGVANLDRISTAICLENYVAIIGIVMLVPVFSLEQSKEIDEIVSSKALSQVI 60

Query: 87  IFLFRWLLTTFYVFLVNAAFFTWLNWSGADFNLWPMTGGVTFTAVAIGTAGMTAALLVGN 146
           + L R L++   + ++   F   L + G +F +     G   +A+ IG+ GM  + L  N
Sbjct: 61  VQLIRILMSIIGIVVLIIGFVNVLIYLGCNFPVVEYIIGSFASAMFIGSLGMFFSNLFNN 120

Query: 147 VSAGYIAGFAWYLLDFMTKGRMTGHFYLFGLLEHEWDNDKW 187
              GY+    + +L+ MTKG+  G F++  + +  +D   W
Sbjct: 121 TIIGYMISIGYLILNMMTKGKYVGKFFIMSMSQGSFDEKYW 161


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.145    0.495 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,284,571,517
Number of extensions: 52775029
Number of successful extensions: 153895
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 153897
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 80
Effective length of database: 1,835,964,253
Effective search space: 146877140240
Effective search space used: 146877140240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)