BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0032.p (1160 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6Y4.1 B3K6Y4_9BACI Sensor protein EC=2.7.13.3 806 0.0 B0ULC0.1 B0ULC0_METS4 Sensor protein EC=2.7.13.3 363 8e-98 C0V055.1 C0V055_9BACT PAS domain S-box 349 1e-93 A0L9T0.1 A0L9T0_MAGSM Sensor protein EC=2.7.13.3 347 3e-93 B5EHN6.1 B5EHN6_GEOBB Sensor protein EC=2.7.13.3 337 4e-90 >B3K6Y4.1 B3K6Y4_9BACI Sensor protein EC=2.7.13.3 Length = 1004 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1003 (42%), Positives = 634/1003 (63%), Gaps = 27/1003 (2%) Query: 5 LFKHLYLRSSIGFAVVSTKDGTMIMANPALCSMFGYTEEEMMKLRYLXXXXIALPEDEPT 64 +++ ++ + G ++S D + M N C + ++++L+ ++ Sbjct: 9 VWEQMFDKLPFGAILISAVDEPVAMVNDRFCEITESKRSDLLQLKPSEIQVLS------N 62 Query: 65 ADHELIMKYLLQSPGAAVDKEKRFVRKDGSIIWIALHI-FLTFDEATGAP-VHLIAEMTE 122 + I++ L+ P + + +E F+R+DG + +A+ I L P + E Sbjct: 63 LSFQQILQSLIYDPTSTLSRESYFIRQDGRQVHVAVSISLLEPPSRDRTPWIMCCLEPGT 122 Query: 123 ITSRKLAENKIEEDRLLYNLITQNTPDMISFADADGTVRYVSPSVEKLLGYSMDEVIGRK 182 + I+ D LL LI+++ D+IS + ADG + Y+SPS +LGY+ +E++G+ Sbjct: 123 VQEGTTLPPIIKNDELL-ALISKSGQDLISISSADGIIEYISPSATDILGYTQEEMMGQH 181 Query: 183 RPDFYHEEDAIEMKQHGKMYSDSDVFTQRARHRDGHYLWLENSFQVMRNSKGGVEKVLTI 242 R +YH+ D+ +MK+ GK++S++D F +R RH++GHYLW E SFQ++R ++G ++KVL I Sbjct: 182 RGKYYHQVDSEQMKEPGKLFSENDSFVRRIRHKEGHYLWFETSFQLIRGAQGEIDKVLAI 241 Query: 243 ARDITERKKYENLLATAQELGNIGSWEWDSLNERMTVSKQLRSIFDLCQDSGTATHSQID 302 R+IT+RK E+ LA AQ + IGSW WD + +T S ++R I+ ++ H Sbjct: 242 GRNITKRKTDEDTLAHAQRIAKIGSWRWDLITHTLTYSDEMRRIYGYQINAIEPNHDT-- 299 Query: 303 YVQLLARVVPEDMAPLQAELSKTLKSGVNGQS---VFRIENDKGERKFIYTHWEVVLDTA 359 L++ V+PED + L + +++ V G++ ++RI+ G+ + I WEV + Sbjct: 300 ---LMSLVIPED----RERLEQVVRTAVQGRADEIIYRIQLKDGQIRTIRAQWEVTVTNE 352 Query: 360 GKTLQINGIVQDITERYRMEEQLRESERNYRLISENSLDFISRNATDNEATYLYASPVCL 419 G+ +++ G+ QDITE+ +E+Q E+E Y+LI+ENSLDFISR+ D T+LY SP C Sbjct: 353 GRPMEMVGMAQDITEQVMIEQQSLENENKYKLITENSLDFISRSTIDC-FTFLYCSPSCY 411 Query: 420 PMLGYTPEEMEGSSGMRYVHPEDMDKVRAYLQETMEGKKLEPIMFRFLCKDGSYLWTETT 479 +LGY PEEM G+S YV+ ED+ ++ YL+ +EGK L PI FR++ KDG ++W E Sbjct: 412 ALLGYRPEEMVGTSTFDYVYAEDIAPLQDYLENCLEGKMLTPITFRYIHKDGRHIWFEVN 471 Query: 480 LRHISSGPGGTAEMVCVTRNISERKQYELKQLESENLYKSLFEYNPSAISAMDLNGHIQS 539 ++IS+ G E++ + R+ISERK E K ESE Y+SLFEYNPSA+ +M+L+G + Sbjct: 472 CKYISTQGGQKNEIISIARDISERKLMEFKLKESEQRYRSLFEYNPSAVYSMNLDGDYIT 531 Query: 540 LNASLQQLTGYSYDSLLHASHTEIIDPDELGMAEQRFELAAKGLPQIFESRLIHREGYSV 599 N +LQ+LTGY+ D L+ I+ ++ F A +G+PQ ++ +IH++G + Sbjct: 532 ANQNLQELTGYTLDELIGMYFGPIVAEKDMARTLFHFNQAKEGIPQSYDLTIIHKDGRPI 591 Query: 600 EVSVIYVPIMVNSQVVGVFSITSNITEHKRHLQQIEKLSYEHALILNSVSEGIFGMNLQG 659 E++ I +PI V+ +VVGV+ IT +ITE R +++I+KLS E L+LN+VSEGI G+++ G Sbjct: 592 EINTINIPIFVDDEVVGVYGITRDITERIRTMEEIKKLSRELTLLLNTVSEGIIGLDIHG 651 Query: 660 ETMFINPAASTMLGYEPGELAGNIKLHTVEQRWLDAEPYAGGRWAQPDSLSGQLSSEDKE 719 + FINPA + ML YEP G +++ D Y G ++ + E Sbjct: 652 QVAFINPAGAAMLDYEPATTIGRPCDQIIKEIRHDGTFYRGEDSPLVQAVKQGIPLSRAE 711 Query: 720 GVFWRQDGSSFLVKYRMSPLFDNGERKGAVVVFRDITEEKAIVRAKESAEQADRAKSEFL 779 V WR DG+SFL Y+++P++D GERKGAV+VFRDIT+EK I+RAKE+AE+AD+AK+EFL Sbjct: 712 IVLWRGDGTSFLADYQVNPIWDQGERKGAVMVFRDITDEKEIIRAKENAERADQAKTEFL 771 Query: 780 AIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESLLHILNEVLDFSKIEAG 839 +MSHELRTPMNGI+GM +LL+ TELDE+QQ Y I+ +SS SLLHILNE+LDFSKIE G Sbjct: 772 TMMSHELRTPMNGIIGMIELLSTTELDEDQQNYIHILMESSGSLLHILNEILDFSKIETG 831 Query: 840 MMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXXVVT-DEIRLRQILVNL 898 MTL + +DL ++ V++LF KA EKG V+ D +RLRQ+LVNL Sbjct: 832 NMTLNHEPIDLRSLLEVVVDLFSAKAKEKGLSLSFNINSANVPDVIIGDALRLRQVLVNL 891 Query: 899 IGNAVKFTEEGEIHVTAGLQSIDETG--DLVIRFTVKDTGIGIPQGSQGLLFQSFSQLHP 956 I NA+KFT EG I T ++ + TG + + F VKDTGIGI Q LF SFSQLHP Sbjct: 892 ISNAIKFTHEGSI--TLNVEGLRRTGTQEFTLAFQVKDTGIGIAPELQHQLFTSFSQLHP 949 Query: 957 SINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTI 999 S+NRKYGGTGLGLAISKKLVEL+GG+IGVES E G+ F+FTI Sbjct: 950 SLNRKYGGTGLGLAISKKLVELMGGVIGVESRENVGSSFYFTI 992 >B0ULC0.1 B0ULC0_METS4 Sensor protein EC=2.7.13.3 Length = 1596 Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 265/803 (33%), Positives = 390/803 (48%), Gaps = 45/803 (5%) Query: 371 DITERYRMEEQLRESERNYRLISENSLDFISRNATDNEATYLYASPVCLPMLGYTPEEME 430 DIT R + EE LRESE +RLI+EN D I+ + LY SP +LGY PE+ Sbjct: 696 DITARRQAEEALRESESRHRLIAENVSDVITLRRAGGDGALLYVSPAIRTVLGYAPEDFA 755 Query: 431 GSSGMRYVHPEDMDKVRAYLQETMEGKKLEPIMFRFLCKDGSYLWTETTLRHISSGPGGT 490 +HPED D+V A + + R +DG +++ ET L + Sbjct: 756 ARPAESLLHPEDRDRVAAVTAAIDAARPTATSVHRLRHRDGHWVFVETALTWMQGEGARG 815 Query: 491 AEMVCVTRNISERKQYELKQLESENLYKSLFEYNPSAISAMDLNGHIQSLNASLQQLTGY 550 A ++ R++S R E ESE LY+ L E I+ +DL Q ++ + + + GY Sbjct: 816 ARILAAMRDVSRRVAAEAAVRESEMLYRLLAETTSDVITRLDLGLAWQYVSPACRAVLGY 875 Query: 551 SYDSLLHASHTEIIDPDELGMAE---QRF---ELAAKGLPQIFESRLIH-REGYSVEVSV 603 + LL + ++ PD+L + +R E+A + + F +R H R G+ + Sbjct: 876 EPEDLLRQRPSAVVHPDDLPALQDLARRLAAGEIAGEHVTTTFRTR--HGRGGFVWTEAG 933 Query: 604 IYVPIMVNSQVVGVFSITSNITEHKRHLQQIEKLSYEHALILNSVSEGIFGMNLQGETMF 663 + + V + ++T K +E + + + S+ I + + Sbjct: 934 LSLMRDEGGAPVSIVCSLRDVTARKAAEAALEASEARYRFLSENGSDMIVQADRDSVRRY 993 Query: 664 INPAASTMLGYEPGELAGNIKLHTVEQRWLDAEPYAGGRWAQPDSLSGQLSSEDKEGVFW 723 ++PA +LGYEP E+ G L V + A D +G + Sbjct: 994 VSPACREILGYEPEEIVGTKPLDGVHP-----DDRAALAATLADLAAGTRDVATSRQRYR 1048 Query: 724 RQDGSSFLVKYRMSPLFD-NGERKGAVVVFRDITEEK----AIVRAKESAEQADRAKSEF 778 R+DGS V+ + L D G +G V RD++E + A+ A+++AEQA RAK++F Sbjct: 1049 RRDGSYVWVEAKFRLLRDAEGRAEGYVASVRDVSERQRQAEALELARDAAEQASRAKTDF 1108 Query: 779 LAIMSHELRTPMNGIMGMADLLA-GTELDEEQQYYTEIINKSSESLLHILNEVLDFSKIE 837 LA MSHE+RTP+NGI+G DLL L Q+ E I + +LL I+N++LDFSKIE Sbjct: 1109 LASMSHEIRTPLNGILGYTDLLLDDPSLGGGQRRQAERIQSAGAALLTIVNDILDFSKIE 1168 Query: 838 AGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXXVVTDEIRLRQILVN 897 AG + L+ Q L ++ N + + A +K +V D+ RLRQIL+N Sbjct: 1169 AGQIELDPQPFLLDALLDNTVSVVRGFARKKAIAVAVRLDGAAPRTLVGDQDRLRQILLN 1228 Query: 898 LIGNAVKFTEEGEIHVTAGLQSIDETGDLVIRFTVKDTGIGIPQGSQGLLFQSFSQLHPS 957 L+ NAVKFT G + + +S +RF V DTGIGIP+ LFQ FSQ+ S Sbjct: 1229 LLNNAVKFTHAGSVTLAVACES-PPGATACLRFAVSDTGIGIPRDKHERLFQRFSQVDNS 1287 Query: 958 INRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFLPLSEPAYQQIPIAG 1017 I R +GGTGLGLAISK LVEL+GG IGVES EG F+FT+ + + + A Sbjct: 1288 IRRDFGGTGLGLAISKNLVELMGGTIGVESVVSEGTTFWFTVTLPVGGAVAAPAAP---- 1343 Query: 1018 MENGNGKEAPDRTSSEGEYGPLSILVAEDHPVNLQLLQAYLKKRGYYADVALNGEMAVEM 1077 + P IL+ ED +N + +A L+ G+ DVA +G A+ Sbjct: 1344 ------------GRAALAQLPARILLVEDLEINQDIARAVLEAAGHEVDVASDGLEAIVA 1391 Query: 1078 VRSRPYDLVFMDIQMPQMDGIEATSIIRHEMGLSP-----VIVAATAFARKEDKELCLRA 1132 V+++ +DLV MD+QMP MDG+ AT RH L P IVA TA A Sbjct: 1392 VQAKSFDLVLMDVQMPGMDGLTAT---RHIRALRPPVCTVPIVAMTANVLPAQIAEFRAA 1448 Query: 1133 GMQDFISKPISPAEVDRVLREWS 1155 GM D + KP ++ RV+ WS Sbjct: 1449 GMDDHVGKPFKRDDLHRVVARWS 1471 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 31 NPALCSMFGYTEEEMMKLRYLXXXXIALPEDEPTADHELIMKYLL-QSPGAAVDKEKRFV 89 +PA ++ GY E++++ R + P+D P A +L + + G V R Sbjct: 866 SPACRAVLGYEPEDLLRQR---PSAVVHPDDLP-ALQDLARRLAAGEIAGEHVTTTFRTR 921 Query: 90 RKDGSIIWIALHIFLTFDEATGAPVHLIAEMTEITSRKLAENKIEEDRLLYNLITQNTPD 149 G +W + L DE GAPV ++ + ++T+RK AE +E Y +++N D Sbjct: 922 HGRGGFVWTEAGLSLMRDEG-GAPVSIVCSLRDVTARKAAEAALEASEARYRFLSENGSD 980 Query: 150 MISFADADGTVRYVSPSVEKLLGYSMDEVIGRKRPDFYHEED--AIEMKQHGKMYSDSDV 207 MI AD D RYVSP+ ++LGY +E++G K D H +D A+ DV Sbjct: 981 MIVQADRDSVRRYVSPACREILGYEPEEIVGTKPLDGVHPDDRAALAATLADLAAGTRDV 1040 Query: 208 FT--QRARHRDGHYLWLENSFQVMRNSKGGVEKVLTIARDITERKKYENLLATAQE 261 T QR R RDG Y+W+E F+++R+++G E + RD++ER++ L A++ Sbjct: 1041 ATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAEGYVASVRDVSERQRQAEALELARD 1096 Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 133/605 (21%), Positives = 240/605 (39%), Gaps = 51/605 (8%) Query: 59 PEDEPTADHELIMKYLLQSPGAAVDKEKRFVRKDGSIIWIALHIFLTFDEATGAPVHLIA 118 P+D P + + + P A D R VR DGSI + F GA L Sbjct: 511 PDDRPAVAASIEAQIASKQP--ATDA-LRIVRPDGSIRHVVTRALCEFGP-DGAVAALFG 566 Query: 119 EMTEITSRKLAENKIEEDRLLYNLITQNTPDMISFADADGTVRYVSPSVEKLLGYSMDEV 178 ++++T + E + E L ++ + +G + + LLG + + Sbjct: 567 TLSDVTELRRVEREAAEAASLLATTLESMDQGLIVVSPEGRIEICNARALALLGLPPELM 626 Query: 179 IGR-----------KRPDFY-HEEDAIEMKQHGKMYSDSDVFTQRARHRDGHYLWLENSF 226 G+ + +F EE+ + + G + + +T R R +G L Sbjct: 627 AGKPTTHEVLEHQWRSGEFAGAEEEVRRLMRAGGIVPEPHTYT-RVRP-NGTVL----EI 680 Query: 227 QVMRNSKGGVEKVLTIARDITERKKYENLLATAQELGN-IGSWEWDSLNER--------M 277 + M + GG+ + T DIT R++ E L ++ I D + R + Sbjct: 681 RTMPMAGGGLVRTYT---DITARRQAEEALRESESRHRLIAENVSDVITLRRAGGDGALL 737 Query: 278 TVSKQLRSIFDLCQDSGTATHSQIDYVQLLARVVPEDMAPLQAELSKTLKSGVNGQSVFR 337 VS +R++ + A ++ LL PED + A + + SV R Sbjct: 738 YVSPAIRTVLGYAPEDFAARPAE----SLLH---PEDRDRVAAVTAAIDAARPTATSVHR 790 Query: 338 IENDKGERKFIYTHWEVVLDTAGKTLQINGIVQDITERYRMEEQLRESERNYRLISENSL 397 + + G F+ T + + +I ++D++ R E +RESE YRL++E + Sbjct: 791 LRHRDGHWVFVETALTWMQGEGARGARILAAMRDVSRRVAAEAAVRESEMLYRLLAETTS 850 Query: 398 DFISRNATDNEATYLYASPVCLPMLGYTPEEMEGSSGMRYVHPEDM----DKVRAYLQET 453 D I+R D + Y SP C +LGY PE++ VHP+D+ D R Sbjct: 851 DVITR--LDLGLAWQYVSPACRAVLGYEPEDLLRQRPSAVVHPDDLPALQDLARRLAAGE 908 Query: 454 MEGKKLEPIMFRFLCKDGSYLWTETTLRHISSGPGGTAEMVCVTRNISERKQYELKQLES 513 + G+ + FR G ++WTE L + G +VC R+++ RK E S Sbjct: 909 IAGEHVT-TTFRTRHGRGGFVWTEAGLSLMRDEGGAPVSIVCSLRDVTARKAAEAALEAS 967 Query: 514 ENLYKSLFEYNPSAISAMDLNGHIQSLNASLQQLTGYSYDSLLHASHTEIIDPDELGMAE 573 E Y+ L E I D + + ++ + +++ GY + ++ + + PD+ Sbjct: 968 EARYRFLSENGSDMIVQADRDSVRRYVSPACREILGYEPEEIVGTKPLDGVHPDDRAALA 1027 Query: 574 QRFELAAKGLPQIFESRLIH--REGYSVEVSVIYVPIM-VNSQVVGVFSITSNITEHKRH 630 A G + SR + R+G V V + + + G + +++E +R Sbjct: 1028 ATLADLAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAEGYVASVRDVSERQRQ 1087 Query: 631 LQQIE 635 + +E Sbjct: 1088 AEALE 1092 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 17/232 (7%) Query: 24 DGTMIMANPALCSMFGYTEEEMMKLRYLXXXXIALPEDEPTADHELIMKYLLQSPGAAVD 83 DG ++ +PA+ ++ GY E+ + PED + +V Sbjct: 733 DGALLYVSPAIRTVLGYAPEDFAAR---PAESLLHPEDRDRVAAVTAAIDAARPTATSV- 788 Query: 84 KEKRFVRKDGSIIWIALHIFLTFDEATGA-PVHLIAEMTEITSRKLAENKIEEDRLLYNL 142 R +DG W+ + LT+ + GA ++A M +++ R AE + E +LY L Sbjct: 789 --HRLRHRDGH--WVFVETALTWMQGEGARGARILAAMRDVSRRVAAEAAVRESEMLYRL 844 Query: 143 ITQNTPDMISFADADGTVRYVSPSVEKLLGYSMDEVIGRKRP-------DFYHEEDAIEM 195 + + T D+I+ D +YVSP+ +LGY ++++ R+RP D +D Sbjct: 845 LAETTSDVITRLDLGLAWQYVSPACRAVLGYEPEDLL-RQRPSAVVHPDDLPALQDLARR 903 Query: 196 KQHGKMYSDSDVFTQRARHRDGHYLWLENSFQVMRNSKGGVEKVLTIARDIT 247 G++ + T R RH G ++W E +MR+ G ++ RD+T Sbjct: 904 LAAGEIAGEHVTTTFRTRHGRGGFVWTEAGLSLMRDEGGAPVSIVCSLRDVT 955 Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 97/487 (19%), Positives = 184/487 (37%), Gaps = 42/487 (8%) Query: 216 DGHYLWLENSFQVMRNSKGGVEKVLTIARDITERKKYE-------NLLATAQELGNIGSW 268 DG E +R+ G +++VL R+IT K+ E L A+E+ ++G W Sbjct: 413 DGAGRVFEEVLTPLRDEAGRLDRVLASIREITHLKRAEAETREAVRRLLMAEEIAHVGHW 472 Query: 269 EWDSLNERMTVSKQLRSIFDLCQDSGTATHSQIDYVQLLARVVPEDMAPLQAELSKTLKS 328 D ++ MT S+++ I L S T L P+D + A + + S Sbjct: 473 RIDLRDDSMTWSREVFRIHGLEPGSVAPT-----LAAALGFCHPDDRPAVAASIEAQIAS 527 Query: 329 GVNGQSVFRIENDKGERKFIYTHWEVVLDTAGKTLQINGIVQDITERYRMEEQLRESERN 388 RI G + + T G + G + D+TE R+E + E+ Sbjct: 528 KQPATDALRIVRPDGSIRHVVTRALCEFGPDGAVAALFGTLSDVTELRRVEREAAEAASL 587 Query: 389 YRLISEN---SLDFISRNATDNEATYLYASPVCLPMLGYTPEEMEGSSGMRYVHPEDM-- 443 E+ L +S E + L +LG PE M G V Sbjct: 588 LATTLESMDQGLIVVS-----PEGRIEICNARALALLGLPPELMAGKPTTHEVLEHQWRS 642 Query: 444 -------DKVRAYLQETMEGKKLEPIMFRFLCKDGSYLWTETTLRHISSGPGGTAEMVCV 496 ++VR ++ G EP + + +G+ L I + P +V Sbjct: 643 GEFAGAEEEVRRLMRAG--GIVPEPHTYTRVRPNGTVL-------EIRTMPMAGGGLVRT 693 Query: 497 TRNISERKQYELKQLESENLYKSLFEYNPSAISAMDL--NGHIQSLNASLQQLTGYSYDS 554 +I+ R+Q E ESE+ ++ + E I+ +G + ++ +++ + GY+ + Sbjct: 694 YTDITARRQAEEALRESESRHRLIAENVSDVITLRRAGGDGALLYVSPAIRTVLGYAPED 753 Query: 555 LLHASHTEIIDPDELGMAEQRFELAAKGLPQIFE-SRLIHREGYSVEVSVIYVPIMV-NS 612 ++ P++ P RL HR+G+ V V + + Sbjct: 754 FAARPAESLLHPEDRDRVAAVTAAIDAARPTATSVHRLRHRDGHWVFVETALTWMQGEGA 813 Query: 613 QVVGVFSITSNITEHKRHLQQIEKLSYEHALILNSVSEGIFGMNLQGETMFINPAASTML 672 + + + +++ + + + L+ + S+ I ++L +++PA +L Sbjct: 814 RGARILAAMRDVSRRVAAEAAVRESEMLYRLLAETTSDVITRLDLGLAWQYVSPACRAVL 873 Query: 673 GYEPGEL 679 GYEP +L Sbjct: 874 GYEPEDL 880 >C0V055.1 C0V055_9BACT PAS domain S-box Length = 1363 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 272/876 (31%), Positives = 433/876 (49%), Gaps = 65/876 (7%) Query: 304 VQLLARVVPEDMAPLQAELSKTLKSGVNGQSVFRIENDKGERKFIYTHWEVVLDTAGKTL 363 V L V PED+ + A L G + +R+ + G +F+ + + V T G L Sbjct: 373 VSLRELVHPEDLPAVTANLRGVSSPGQRYRLEYRLRHRDGSLRFVEEYGQCVRVTEGMPL 432 Query: 364 QINGIVQDITERYRMEEQLRESERNYRLISENSLDFISRNATDNEATYLYASPVCLPMLG 423 + G++ D+T+R E+ +++ +R Y+ I E + I + + D L A+P MLG Sbjct: 433 -LEGLLTDVTDRKHAEQAVQQVQRRYQDIFERISEGIFQTSLDGR--LLLANPALARMLG 489 Query: 424 Y-TPEEM----EGSSGMRYVHPEDMDKVRAYLQETMEGKKLEPIMFRFLCKDGSYLWTET 478 Y +PEE+ + + Y P D D+ YL+ +E ++ + KDG ++W Sbjct: 490 YASPEELLSEVQDVARQIYARPADRDR---YLRIMLEEGEVRDFELEAVRKDGEHIWLSI 546 Query: 479 TLRHISSGPGGTAEMVCVTRNISERKQYELKQLESENLYKSLFEYNPSAISAMDLNGHIQ 538 + R + G + ++I++RK+ E ES L+ S F++ P ++ + +G Sbjct: 547 SSRWLLDEARGMRIIEGTCQDITQRKRAEEALRESMELFVSAFDHAPIGMALVATDGRWL 606 Query: 539 SLNASLQQLTGYSYDSLLHASHTEIIDPDELGMAEQRFELAAKG-LPQI-FESRLIHREG 596 +N SL ++ GYS LL + +I PD+L + Q G + Q E R H+ G Sbjct: 607 RVNPSLCRMLGYSERELLGMTFQDITHPDDLELDLQHVRQVLDGEIAQYEMEKRYYHKHG 666 Query: 597 YSVEVSVIYVPIM--VNSQVVGVFSITSNITEHKRHLQQIEKLSYEHALILNSVSEGIFG 654 S+ +++ V ++ ++ Q + S +IT+ K + I + + ++ + + + Sbjct: 667 -SIVWALLSVSLVRDLDGQPLYFVSQIQDITQRKEIERAITESEERYRRLVEAFPD-LIA 724 Query: 655 MNLQGETMFINPAASTMLGY-EPGELAGNIKLHTV--EQRWLDAEPYAGGRWAQPDSLS- 710 + G ++NPA + MLG +P EL G L V E+R G AQ DS+ Sbjct: 725 IVQDGRVAYVNPAGARMLGAKDPQELVGRSVLEFVHPERR--------GEVAAQIDSIGE 776 Query: 711 GQLSSEDKEGVFWRQDGSSFLVKYRMSPLFDNGERKGAVVVFRDITEEKAIV----RAKE 766 G + E F DG + ++ P + +R + ++ RDITE + + RA++ Sbjct: 777 GGPPPDSIEERFITLDGREIYAEVKVVPT-SHEDRPASQIIARDITESRRVAEELRRARD 835 Query: 767 SAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESLLHI 826 A +A R KSEF+A MSHE+RTP+N I+GM +LL T L E Q+ + + I SS+SLL I Sbjct: 836 QAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPLSERQREFVQTIQTSSQSLLSI 895 Query: 827 LNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXXVVT 886 +N++LDFSKIEAG M LE DL ++ E+ A KG ++ Sbjct: 896 INDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVDPTIPRTLIG 955 Query: 887 DEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLVIRFTVKDTGIGIPQGSQGL 946 D RLRQ+L+NL+ NAVKFTE+GE+ + L ++ + F V+DTGIGI G Sbjct: 956 DPARLRQVLLNLLSNAVKFTEQGEVLLRV-LPHRAADSEVELLFEVRDTGIGIDSAHLGK 1014 Query: 947 LFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFLPLS 1006 LFQ F+Q S R+YGGTGLGL ISK LVEL+GG I ES G G+ F FT Sbjct: 1015 LFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGSTFRFT-------- 1066 Query: 1007 EPAYQQIPIAGMENGNGKE---APDRTSSEGEYGPLSILVAEDHPVNLQLLQAYLKKRGY 1063 + +A ME ++ PD L +LV +D + Q+L++YL+ Sbjct: 1067 ----ARFKVAAMERSPTQQLVLPPD----------LHVLVVDDQAAHRQILRSYLESWHM 1112 Query: 1064 YADVALNGEMAVEMVRSRPYDLVFMDIQMPQMDGIEATSIIRHEMGLSPV--IVAATAFA 1121 + A +G A+E + +DL +D+ +P DG + +R LSP +V TA Sbjct: 1113 RCEEAADGAQAIEKAQREHFDLAILDLLLPDTDGFDLAQQLRR---LSPSMKLVLLTAHH 1169 Query: 1122 RKEDKELCLRAGMQDFISKPISPAEVDRVLREWSAH 1157 + E + AG ++ KPI +++ VL SA Sbjct: 1170 EQGQGERAVDAGFSAYLLKPIRQSQLMDVLANISAR 1205 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 130/536 (24%), Positives = 230/536 (42%), Gaps = 52/536 (9%) Query: 131 NKIEEDRLLYNLITQNTPDMISFADADG--TVRYVSPSVEKLLGYSMDEVIGRKRP--DF 186 ++++E + + NTP M+ D ++ +VS ++ GYS E++G K + Sbjct: 319 DRLQESERRFATLLANTPAMVYRRRQDDRWSLEFVSSYAREITGYSDAELLGGKVSLREL 378 Query: 187 YHEEDAIEMKQHGKMYSDSD---VFTQRARHRDGHYLWLENSFQVMRNSKGG--VEKVLT 241 H ED + + + S R RHRDG ++E Q +R ++G +E +LT Sbjct: 379 VHPEDLPAVTANLRGVSSPGQRYRLEYRLRHRDGSLRFVEEYGQCVRVTEGMPLLEGLLT 438 Query: 242 IARDITERKKYENLLATAQELGNIGSWEWDSLNERMTVSKQLRSIFDLCQDSGTATHSQI 301 D+T+RK E + Q + + ER++ IF D G + Sbjct: 439 ---DVTDRKHAEQAVQQVQR-------RYQDIFERIS-----EGIFQTSLD-GRLLLANP 482 Query: 302 DYVQLLARVVPED-MAPLQAELSKTLKSGVNGQSVFRIENDKGE-RKF------------ 347 ++L PE+ ++ +Q + + RI ++GE R F Sbjct: 483 ALARMLGYASPEELLSEVQDVARQIYARPADRDRYLRIMLEEGEVRDFELEAVRKDGEHI 542 Query: 348 ---IYTHWEVVLDTAGKTLQINGIVQDITERYRMEEQLRESERNYRLISENSLDFISRNA 404 I + W +LD A I G QDIT+R R EE LRES + +++ ++ A Sbjct: 543 WLSISSRW--LLDEARGMRIIEGTCQDITQRKRAEEALRESMELFVSAFDHAPIGMALVA 600 Query: 405 TDNEATYLYASPVCLPMLGYTPEEMEGSSGMRYVHPEDMDKVRAYLQETMEGKKLEPIM- 463 TD +L +P MLGY+ E+ G + HP+D++ ++++ ++G+ + M Sbjct: 601 TDGR--WLRVNPSLCRMLGYSERELLGMTFQDITHPDDLELDLQHVRQVLDGEIAQYEME 658 Query: 464 FRFLCKDGSYLWTETTLRHISSGPGGTAEMVCVTRNISERKQYELKQLESENLYKSLFEY 523 R+ K GS +W ++ + G V ++I++RK+ E ESE Y+ L E Sbjct: 659 KRYYHKHGSIVWALLSVSLVRDLDGQPLYFVSQIQDITQRKEIERAITESEERYRRLVEA 718 Query: 524 NPSAISAMDLNGHIQSLN-ASLQQLTGYSYDSLLHASHTEIIDPDELGMAEQRFELAAKG 582 P I+ + +G + +N A + L L+ S E + P+ G + + +G Sbjct: 719 FPDLIAIVQ-DGRVAYVNPAGARMLGAKDPQELVGRSVLEFVHPERRGEVAAQIDSIGEG 777 Query: 583 --LPQIFESRLIHREGYSVEVSVIYVPIMVNSQVVGVFSITSNITEHKRHLQQIEK 636 P E R I +G + V VP + I +ITE +R +++ + Sbjct: 778 GPPPDSIEERFITLDGREIYAEVKVVPTSHEDRPASQI-IARDITESRRVAEELRR 832 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 120/493 (24%), Positives = 214/493 (43%), Gaps = 55/493 (11%) Query: 39 GYTEEEMMKLRYLXXXXIALPEDEPTADHELIMKYLLQSPGAAVDKEKRFVRKDGSIIWI 98 GY++ E++ + + + PED P L + SPG E R +DGS Sbjct: 362 GYSDAELLGGK-VSLRELVHPEDLPAVTANL---RGVSSPGQRYRLEYRLRHRDGS---- 413 Query: 99 ALHIFLTFDEATGAPVHLIAEM-------TEITSRKLAENKIEEDRLLYNLITQNTPDMI 151 L F E G V + M T++T RK AE +++ + Y I + + I Sbjct: 414 -----LRFVEEYGQCVRVTEGMPLLEGLLTDVTDRKHAEQAVQQVQRRYQDIFERISEGI 468 Query: 152 SFADADGTVRYVSPSVEKLLGYSMDEVIGRKRPDFYHE---EDAIEMKQHGKMYSDSDV- 207 DG + +P++ ++LGY+ E + + D + A + M + +V Sbjct: 469 FQTSLDGRLLLANPALARMLGYASPEELLSEVQDVARQIYARPADRDRYLRIMLEEGEVR 528 Query: 208 -FTQRARHRDGHYLWLENSFQVMRNSKGGVEKVLTIARDITERKKYENLLATAQELGNIG 266 F A +DG ++WL S + + + G+ + +DIT+RK+ E L + EL + Sbjct: 529 DFELEAVRKDGEHIWLSISSRWLLDEARGMRIIEGTCQDITQRKRAEEALRESMEL-FVS 587 Query: 267 SWEWDSLNERMTVS--KQLRSIFDLCQDSGTATHSQIDYVQLLARVVPEDMAPLQAELS- 323 +++ + + + + LR LC+ G + +LL + P EL Sbjct: 588 AFDHAPIGMALVATDGRWLRVNPSLCRMLGYSER------ELLGMTFQDITHPDDLELDL 641 Query: 324 KTLKSGVNGQSVFRIENDKGERKFIYTH----W-----EVVLDTAGKTLQINGIVQDITE 374 + ++ ++G+ I + E+++ + H W +V D G+ L +QDIT+ Sbjct: 642 QHVRQVLDGE----IAQYEMEKRYYHKHGSIVWALLSVSLVRDLDGQPLYFVSQIQDITQ 697 Query: 375 RYRMEEQLRESERNYRLISENSLDFISRNATDNEATYLYASPVCLPMLGYT-PEEMEGSS 433 R +E + ESE YR + E D I A + Y +P MLG P+E+ G S Sbjct: 698 RKEIERAITESEERYRRLVEAFPDLI---AIVQDGRVAYVNPAGARMLGAKDPQELVGRS 754 Query: 434 GMRYVHPEDMDKVRAYLQETME-GKKLEPIMFRFLCKDGSYLWTETTLRHISSGPGGTAE 492 + +VHPE +V A + E G + I RF+ DG ++ E + S ++ Sbjct: 755 VLEFVHPERRGEVAAQIDSIGEGGPPPDSIEERFITLDGREIYAEVKVVPTSHEDRPASQ 814 Query: 493 MVCVTRNISERKQ 505 ++ R+I+E ++ Sbjct: 815 IIA--RDITESRR 825 Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 14/262 (5%) Query: 6 FKHLYLRSSIGFAVVSTKDGTMIMANPALCSMFGYT--EEEMMKLRYLXXXXIALPEDEP 63 ++ ++ R S G S DG +++ANPAL M GY EE + +++ + A P Sbjct: 457 YQDIFERISEGIFQTSL-DGRLLLANPALARMLGYASPEELLSEVQDVARQIYARP---- 511 Query: 64 TADHELIMKYLLQSPGAAVDKEKRFVRKDGSIIWIALHIFLTFDEATGAPVHLIAEMTEI 123 AD + ++ +L+ G D E VRKDG IW+++ DEA G + + +I Sbjct: 512 -ADRDRYLRIMLEE-GEVRDFELEAVRKDGEHIWLSISSRWLLDEARGMRI-IEGTCQDI 568 Query: 124 TSRKLAENKIEEDRLLYNLITQNTPDMISFADADGTVRYVSPSVEKLLGYSMDEVIGRKR 183 T RK AE + E L+ + P ++ DG V+PS+ ++LGYS E++G Sbjct: 569 TQRKRAEEALRESMELFVSAFDHAPIGMALVATDGRWLRVNPSLCRMLGYSERELLGMTF 628 Query: 184 PDFYHEEDAIEMKQHGKMYSDSDV----FTQRARHRDGHYLWLENSFQVMRNSKGGVEKV 239 D H +D QH + D ++ +R H+ G +W S ++R+ G Sbjct: 629 QDITHPDDLELDLQHVRQVLDGEIAQYEMEKRYYHKHGSIVWALLSVSLVRDLDGQPLYF 688 Query: 240 LTIARDITERKKYENLLATAQE 261 ++ +DIT+RK+ E + ++E Sbjct: 689 VSQIQDITQRKEIERAITESEE 710 Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 7/127 (5%) Query: 1034 GEYGPLSILVAEDHPVNLQLLQAYLKKRGYYADVALNGEMAVEMV--RSRPYDLVFMDIQ 1091 GE P IL+AED+PVN +L L+K GY NG AVE + R + Y LV MD Q Sbjct: 1229 GERKP--ILLAEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMARRGQEYCLVLMDCQ 1286 Query: 1092 MPQMDGIEATSIIRH---EMGLSPVIVAATAFARKEDKELCLRAGMQDFISKPISPAEVD 1148 MP+MDG EAT IR + G I+A TA A + D+E CL AGM D++SKP++ ++ Sbjct: 1287 MPEMDGYEATRQIRRLETKSGRRTPIIALTANALEGDREACLAAGMDDYLSKPLTMGKLK 1346 Query: 1149 RVLREWS 1155 VL W+ Sbjct: 1347 AVLDRWA 1353 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 105/449 (23%), Positives = 188/449 (41%), Gaps = 65/449 (14%) Query: 362 TLQINGIVQDITERYRMEEQLRESERNYRLISENSLDFISRNATDNEATYLYASPVCLPM 421 T+++ GI++D Y ++L+ESER + + N+ + R D+ + + S + Sbjct: 304 TVRMVGILRDHQRDY---DRLQESERRFATLLANTPAMVYRRRQDDRWSLEFVSSYAREI 360 Query: 422 LGYTPEEMEGS--SGMRYVHPEDMDKVRAYLQETMEGKKLEPIMFRFLCKDGSYLWTETT 479 GY+ E+ G S VHPED+ V A L+ + + +R +DGS + E Sbjct: 361 TGYSDAELLGGKVSLRELVHPEDLPAVTANLRGVSSPGQRYRLEYRLRHRDGSLRFVEEY 420 Query: 480 LRHISSGPGGTAEMVCVTRNISERKQYELKQLESENLYKSLFEYNPSAISAMDLNGHIQS 539 + + G +T ++++RK E + + Y+ +FE I L+G + Sbjct: 421 GQCVRVTEGMPLLEGLLT-DVTDRKHAEQAVQQVQRRYQDIFERISEGIFQTSLDGRLLL 479 Query: 540 LNASLQQLTGY-SYDSLLHASHTEIIDPDELGMAEQRFELAA-----------KGLPQIF 587 N +L ++ GY S + LL +E+ D +A Q + A +G + F Sbjct: 480 ANPALARMLGYASPEELL----SEVQD-----VARQIYARPADRDRYLRIMLEEGEVRDF 530 Query: 588 ESRLIHREGYSVEVSVIYVPIMVNSQVVGVFSITS-NITEHKRHLQQIEKLSYEHALILN 646 E + ++G + +S+ ++ ++ + + T +IT+ KR E L L ++ Sbjct: 531 ELEAVRKDGEHIWLSISSRWLLDEARGMRIIEGTCQDITQRKR---AEEALRESMELFVS 587 Query: 647 SVSEGIFGMNL---QGETMFINPAASTMLGYEPGELAG------------NIKLHTVEQR 691 + GM L G + +NP+ MLGY EL G + L V Q Sbjct: 588 AFDHAPIGMALVATDGRWLRVNPSLCRMLGYSERELLGMTFQDITHPDDLELDLQHVRQ- 646 Query: 692 WLDAEPYAGGRWAQPDSLSGQLSSEDKEGVFWRQDGSSFLVKYRMSPLFD-NGERKGAVV 750 L G+++ + E ++ + GS +S + D +G+ V Sbjct: 647 ----------------VLDGEIAQYEMEKRYYHKHGSIVWALLSVSLVRDLDGQPLYFVS 690 Query: 751 VFRDITEEKAIVRA-KESAEQADRAKSEF 778 +DIT+ K I RA ES E+ R F Sbjct: 691 QIQDITQRKEIERAITESEERYRRLVEAF 719 >A0L9T0.1 A0L9T0_MAGSM Sensor protein EC=2.7.13.3 Length = 1120 Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 330/1171 (28%), Positives = 546/1171 (46%), Gaps = 167/1171 (14%) Query: 56 IALPEDEPTADHELIMKYLLQSPGAAVDKEKRFVRKDGSIIWIAL--HIFLTFDEATGAP 113 +A+P+D P + + Q+PG V+ E F + G I W + + + +G+P Sbjct: 7 LAIPQDRPAILQAMAQAW--QNPGQPVEVE--FHVEIGEI-WTKVIRCVMQSTPRPSGSP 61 Query: 114 VHLIAEMTEITS-RKLAENKIE-EDRLLYNLITQNTPDMISFADADGTVRYVSPSVEKLL 171 L + IT RK+ + + E+RL NLI + + + D Y S E++L Sbjct: 62 QRLFGSVQNITLLRKIGDALVHSEERL--NLILEGAQEGMWEWDIASGALYFSCHWERML 119 Query: 172 GYSMDEVIGRKRPDFY-------HEEDAIE----MKQHGKMYSDSDVFTQRARHRDGHYL 220 G+ E+ P Y H +D ++QH + ++ R + G +L Sbjct: 120 GFEPGEI-----PHTYQAWITQIHPDDKTATLEALEQHLQGHTQHFEIEHRQHTKKGTWL 174 Query: 221 WLENSFQVMR-NSKGGVEKVLTIARDITER--------------KKYENLLATAQELGNI 265 WL +V++ + +++ ++T+R K+ E L G + Sbjct: 175 WLLTRGKVVQWGDQQTPLRMMGTQMNVTDRIRGEQALRFAHTQLKQQERLFHDYFAHGVV 234 Query: 266 GSWEWDSLNERMTVSKQLRSIFDLCQDSGTAT----------HSQ--IDYVQLLARVVPE 313 G + +KQL + + CQ H ID + L R + E Sbjct: 235 GMAITTPDRLFLHANKQLCVLLE-CQPKALLNTPIDQWLDPRHRDYYIDQYERLVRHLTE 293 Query: 314 DMAPLQAELSKTLKSGVNGQSVFRIENDKGERKFIYTHWEVVLDTAGKTLQINGIVQDIT 373 + EL L + + G R + + DT+G+ D++ Sbjct: 294 NF-----ELELPLCTAL------------GRRVSVNLSTRALWDTSGRITHCIHTAVDLS 336 Query: 374 ERYRMEEQLRESERNYRLISENSLDFISRNATDNEATYLYASPVCLPMLGYTPEEMEGSS 433 E + Q++ESE+ +R I E++ +++ D T + + +LGY+P+E+ G S Sbjct: 337 EHNHIIAQVKESEKRFRAIFEHAGLAVAQG--DIHGTIIKVNSAYANLLGYSPDELVGRS 394 Query: 434 GMRYVHPEDMDKVRAYLQETMEGKK-LEPIMFRFLCKDGSYLWTETTLRHISSGPGGTAE 492 HP D + + L + + K+ + + R L KDGS++W E+T+ +++ Sbjct: 395 LQSLTHPSDFPENLSLLHDLAKKKRSVYTLEKRILHKDGSWIWVESTVTALTNAMDEPEF 454 Query: 493 MVCVTRNISERKQYELKQLESENLYKSLFEYNPSAISAMD-LNGHIQSLNASLQQLTGYS 551 ++ +TR+I++R++ E +ESE Y+ LF+ N + +D +NG I N + GYS Sbjct: 455 LINMTRDITDRRRAEAALVESEQRYRQLFQRNKAVELLIDPVNGQIVDANMAAADYYGYS 514 Query: 552 YDSL--LHASHTEIIDPDELGMAEQRFELAAKGLPQIFESRLIHREGYSVEVSVIYVPIM 609 D+L ++ + I+ DE+ R E + Q F RL E VE+ P+ Sbjct: 515 CDTLRQMNIAQINILTRDEIEQEMLRAEQENRNHFQ-FRHRLSSGEVRDVEIH--SGPVE 571 Query: 610 VNSQVVGVFSITSNITE---------HKRHLQQIEKLSYEHALILNSVSEGIFGMNLQ-G 659 + + + ++SI +ITE H RH Q+E IL+S+ ++ + Q G Sbjct: 572 IQGRAL-LYSIVHDITERRRIEAALSHNRH--QLEASHGRLITILDSLQSIVYVADPQTG 628 Query: 660 ETMFINPAASTMLGYEPGELAGNIK------LHTVEQRWLDAEPYAGGR-------WAQP 706 E ++ N ++AGN+K L+ ++R P + R W Sbjct: 629 EILYHNRYLF--------DIAGNLKGEREELLYPNKKRLSQGTPASRSRGRNHAQSWEYC 680 Query: 707 DSLSGQLSSEDKEGVFWRQDGSSFLVKYRMSPLFDNGERKGAVVVFRDITEEKAIVRAKE 766 ++ + S + + W DG + R+ D K + E+A+++AKE Sbjct: 681 SPINHRWYSAHSQPITW-VDGRTV----RLEVATDINSLKQS---------EQALLQAKE 726 Query: 767 SAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESLLHI 826 AE A+RAKS+FLA MSH++RTPMN ++GM +LL + LD EQ +Y +II ++ +LL + Sbjct: 727 LAESANRAKSDFLATMSHDIRTPMNAVLGMVELLGESSLDPEQSHYLKIIRRAGSTLLSL 786 Query: 827 LNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXXVVT 886 +N++LD SKIEAG + LEL L++ + +VM++ KA EKG V Sbjct: 787 INDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKASEKGLQLQTHLHIPPQQRVRG 846 Query: 887 DEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLVIRFTVKDTGIGIPQGSQGL 946 D RLRQIL+NL+GNAVKFT++G + +T + + D F V DTG GI Q + Sbjct: 847 DAQRLRQILLNLLGNAVKFTQQGSVSLT-----LQQQPDGQYSFQVADTGPGIAPHRQKI 901 Query: 947 LFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFLPLS 1006 +F+ F Q +R +GG+GLGL+I KLV + G + ++S G G+ F+FT LPL+ Sbjct: 902 IFEPFVQEESGTHRHFGGSGLGLSICHKLVTAMRGTLWLKSQLGHGSIFYFT----LPLA 957 Query: 1007 EPAYQQIPIAGMENGNGKEAPDRTSSEGE-YGPLS--------ILVAEDHPVNLQLLQAY 1057 ME APD S + + P+S +LV +D N L+QA+ Sbjct: 958 ---------TAME-----PAPDEVSPQSVLHAPVSLTQLVNKRLLVVDDAEDNRNLIQAF 1003 Query: 1058 LKKRGYYADVALNGEMAVEMVRSRPYDLVFMDIQMPQMDGIEATSIIR-HEM----GLSP 1112 LK +A +GE AV + + + +DL+ MDIQMP M+G+EAT +IR HE +P Sbjct: 1004 LKSCQMQIQMAEDGEQAVRLCQEQRFDLILMDIQMPIMNGLEATRLIRQHEQMQHKSRTP 1063 Query: 1113 VIVAATAFARKEDKELCLRAGMQDFISKPIS 1143 I+A +A A + L AG +SKPI+ Sbjct: 1064 -IIALSAHAMLDVNNDALAAGCDLHLSKPIA 1093 >B5EHN6.1 B5EHN6_GEOBB Sensor protein EC=2.7.13.3 Length = 1229 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 245/650 (37%), Positives = 347/650 (53%), Gaps = 38/650 (5%) Query: 525 PSAISAMDLNGHIQSLNASLQQLTGYSYDSLLHASHTEIID----PDELGMAEQRFELAA 580 P + D G I+ +N + ++TGY + L EII P+E E+ + Sbjct: 374 PVTVMITDPQGGIEYVNPNFTKVTGYQPEDALGRDPREIIGTGCYPEEF--YEELWGTLR 431 Query: 581 KGLPQIFESRLIHREGY----SVEVSVIYVPIMVNSQVVGVFSITSNITEHKRHLQQIEK 636 G E R + G SV +S + P + VGV +IT+ KR + + + Sbjct: 432 SGKEWHGEIRNKRKSGELYWESVSISPVKSPRGEINNFVGVME---DITQRKRAEEALIR 488 Query: 637 LSYEHALILNSVSEGIFGMNLQGETMFINPAASTMLGY-EPGELAG-NIKL---HTVEQR 691 + L+L S +E IFG++L G F NP+ + +LG+ +P +L G N+ L HT + Sbjct: 489 SDEQIRLLLESTAEAIFGIDLMGNCTFANPSCARLLGHADPDQLLGKNMHLLMHHTTSE- 547 Query: 692 WLDAEPYAGGRWAQPDSLSGQLSSEDKEGVFWRQDGSSFLVKYRMSPLFDNGERKGAVVV 751 +P A L G + VFWR+DGSSF V+Y P +GE G VV Sbjct: 548 ---GKPNPVQECAAYQVLRGGEGVHKDDDVFWRRDGSSFAVEYWSYPQLHDGELVGGVVT 604 Query: 752 FRDITEEK----AIVRAKESAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDE 807 F DI+E K ++RA E+AE A RAKSEFLA MSHE+RTPMN +GM LL TEL E Sbjct: 605 FFDISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLQHTELSE 664 Query: 808 EQQYYTEIINKSSESLLHILNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALE 867 Q+ Y E +S LL ++N++LDFSK+EAG M LE ++ V+ ++ + E Sbjct: 665 TQKSYLEKAQTASGVLLGVINDILDFSKVEAGRMVLETTPFRMAAVLSDLQTVAQATLRE 724 Query: 868 KGXXXXXXXXXXXXXXVVTDEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLV 927 K + D +RL Q+L+NL NA+KFTE+G++ V L + E G++ Sbjct: 725 KPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIKFTEKGKVEVEVALLA-QEQGEVT 783 Query: 928 IRFTVKDTGIGIPQGSQGLLFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVES 987 +RF+V DTGIG+ Q +F F+Q S RKYGGTGLGLAIS++LV+L+GG + V S Sbjct: 784 LRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGTGLGLAISRELVQLMGGRMWVVS 843 Query: 988 NEGEGAEFFFTIHVFLPLSEPAYQQIPIAGMENGNGKEAPDRTSSEGEYGPLSILVAEDH 1047 G G+ F F H+ LP + A Q P G G E PD + G + +LV ED+ Sbjct: 844 EPGRGSTFSFIAHLALPAASGA-QAAP-----GGEGPE-PDSDTQPALTG-VRVLVVEDN 895 Query: 1048 PVNLQLLQAYLKKRGYYADVALNGEMAVEMVR--SRPYDLVFMDIQMPQMDGIEATSIIR 1105 +N ++ + L+K G DVA NG A+ +V Y V MD+ MP MDG+EAT IR Sbjct: 896 LINQEVARLILEKGGIKVDVARNGAEALSLVHLPQACYRAVLMDVHMPVMDGLEATRRIR 955 Query: 1106 HEMGLSPV-IVAATAFARKEDKELCLRAGMQDFISKPISPAEVDRVLREW 1154 + L+ + I+A TA E++ LCL AGM D +SKPI ++ LR W Sbjct: 956 LDPALARLPIIAMTASVFSEERRLCLEAGMNDQVSKPIDVPQLFATLRRW 1005 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,698,202,706 Number of extensions: 283715113 Number of successful extensions: 972016 Number of sequences better than 1.0e-05: 36265 Number of HSP's gapped: 910343 Number of HSP's successfully gapped: 42392 Length of query: 1160 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 1013 Effective length of database: 1,675,806,998 Effective search space: 1697592488974 Effective search space used: 1697592488974 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 137 (57.4 bits)