BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0030.p
         (133 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KCK5.1 B3KCK5_9BACI Putative uncharacterized protein                159   6e-38
Q8R7D0.1 Q8R7D0_THETN Putative uncharacterized protein                 76   7e-13
B3K3U6.1 B3K3U6_9BACI Putative uncharacterized protein                 76   1e-12
Q182G8.1 Q182G8_CLOD6 Putative lipoprotein                             76   1e-12
B0KBX1.1 B0KBX1_THEP3 Putative uncharacterized protein                 71   3e-11

>B3KCK5.1 B3KCK5_9BACI Putative uncharacterized protein
          Length = 133

 Score =  159 bits (403), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 102/131 (77%), Gaps = 2/131 (1%)

Query: 1   MKRGDMILILVVLLVAGSLYGIKAYKDHNEHYAQGELQAVITVDGKEYKTVSLTKEEQTI 60
           ++RGDMIL   ++L+ GS  G++ +K  +  Y QG+LQA+ITV+GKEY+TV L  +E+ I
Sbjct: 4   IRRGDMIL-FAIILILGSFTGLQWWKHSHVEYQQGQLQALITVNGKEYETVPLNGDERII 62

Query: 61  DIQTKFGHNILKVYDYGIRMTYSDAPLPIALDMGFISRPKQQILCVPARLMVEVINPHRS 120
           DI+TKFGHN LKVYDYGI+M YSDAP  IALDMGFIS P QQI+CVP R++VEV+ P   
Sbjct: 63  DIKTKFGHNTLKVYDYGIQMIYSDAPRRIALDMGFISEPYQQIICVPTRVVVEVLVPEHE 122

Query: 121 INDDNELDAVI 131
            N ++ELDAV+
Sbjct: 123 RN-ESELDAVV 132


>Q8R7D0.1 Q8R7D0_THETN Putative uncharacterized protein
          Length = 126

 Score = 76.3 bits (186), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 11/119 (9%)

Query: 1   MKRGDMILILVVLLVAGSL---YGIKAYKDHNEHYAQGELQAVITVDGKEYKTVSL--TK 55
           MK+GD+ +IL V +++  L   Y I A + ++  YA      VI +DGK YK VSL    
Sbjct: 1   MKKGDIFIILFVAVLSVGLLVFYRISATQQYHHKYA------VIMIDGKVYKKVSLDDVN 54

Query: 56  EEQTIDIQTKFGHNILKVYDYGIRMTYSDAPLPIALDMGFISRPKQQILCVPARLMVEV 114
            ++ I I TK G NIL V + G+++ +++ P  I +  GFI +P Q I+C+P R++VE+
Sbjct: 55  HKEEIPIVTKQGKNILLVKNGGVQVIHAECPDKICMKEGFIDKPGQSIVCLPFRIVVEI 113


>B3K3U6.1 B3K3U6_9BACI Putative uncharacterized protein
          Length = 126

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 1   MKRGDMILILVVLLVAGSLYGIKAYKDHNEHYAQGELQAVITVDGKEYKTVSLTKEEQTI 60
           MKRGD I I +VL+ A + +GI  +   +   A+G   A+I V+GK Y TV+LT+E + I
Sbjct: 1   MKRGD-IGIALVLIAAVAWFGISKFMGED-GTAKGTY-AMIEVNGKHYDTVALTEEPRDI 57

Query: 61  DIQTKFGHNILKVYDYGIRMTYSDAPLPIALDMGFISRPKQQILCVPARLMVEV 114
           +I+T+ G+N+L++   GI M  SD P  + +  G +      I+C+P R+ VEV
Sbjct: 58  EIRTERGYNLLRISREGIEMVESDCPDQLCIGFGHVHDIHGTIVCLPNRVFVEV 111


>Q182G8.1 Q182G8_CLOD6 Putative lipoprotein
          Length = 123

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 9/130 (6%)

Query: 1   MKRGDMILILVVLLVAGSLYGIKAYKDHNEHYAQGELQAVITVDGKEYKTVSLTKEEQTI 60
           MK+ D++LIL +L+V  + YGI      N   ++      I VD K YKTVS+  +E+  
Sbjct: 1   MKKKDILLILGILVVITACYGI-----INVINSKNAGNIEIYVDNKLYKTVSINAKEE-F 54

Query: 61  DIQTKFGHNILKVYDYGIRMTYSDAPLPIALDMGFISRPKQQILCVPARLMVEVINPHRS 120
            I+ + G+NI+K++D G+ +  +  P  + +  GFI++P Q I+C+P R+ +++    + 
Sbjct: 55  KIENRGGYNIVKIHDKGVEIVDASCPDKVCVHTGFINKPSQSIVCIPNRVSIKINTNEK- 113

Query: 121 INDDNELDAV 130
             +DN+ D +
Sbjct: 114 --NDNQEDII 121


>B0KBX1.1 B0KBX1_THEP3 Putative uncharacterized protein
          Length = 118

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 10/111 (9%)

Query: 8   LILVVLLVAGSL--YGIKAYKDHNEHYAQGELQAVITVDGKEYKTVSL--TKEEQTIDIQ 63
           ++ VV+L  G L  Y I   + ++  YA      VI VDGK YK +SL      + I I 
Sbjct: 1   MLFVVVLAIGLLVFYKISTTQHYHHKYA------VIMVDGKIYKEISLEDVNYREEIPIV 54

Query: 64  TKFGHNILKVYDYGIRMTYSDAPLPIALDMGFISRPKQQILCVPARLMVEV 114
           TK+G N+L V + GI++ Y++ P  I +  GFI +P Q I+C+P R++VE+
Sbjct: 55  TKYGKNVLLVKNGGIQVIYAECPDKICIKEGFIDKPGQSIVCLPFRMVVEI 105


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 762,941,972
Number of extensions: 28247781
Number of successful extensions: 67194
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 67227
Number of HSP's successfully gapped: 46
Length of query: 133
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 35
Effective length of database: 2,137,436,733
Effective search space: 74810285655
Effective search space used: 74810285655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)