BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0029.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJE1.1 B3KJE1_9BACI Putative uncharacterized protein 196 3e-48 C0ZBD5.1 C0ZBD5_BREBN Conserved hypothetical membrane protein 123 2e-26 Q848Z8.1 Q848Z8_BACME Putative uncharacterized protein 95 6e-18 C2R6E0.1 C2R6E0_BACCE Putative uncharacterized protein 87 2e-15 B7HIC0.1 B7HIC0_BACC4 Putative uncharacterized protein 86 3e-15 >B3KJE1.1 B3KJE1_9BACI Putative uncharacterized protein Length = 325 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 109/290 (37%), Positives = 165/290 (56%), Gaps = 31/290 (10%) Query: 32 DALHYYVAPKLARWIRLCPVPLSLMALSLGIQALFGKSARLCDCEHRLPRSGLNSVMLYX 91 ++L YY+AP + + LCPVPL +A + A+ G S +CDCEH LP + ++ +Y Sbjct: 32 NSLDYYLAPHMQTLLLLCPVPLLFIAFGMLWHAIAGVSGEVCDCEHPLPSGLIKNISVYG 91 Query: 92 XXXXXXXXXXXXXDRSLGSAAAAKKGISLSY----------------------------- 122 D++LGS AAKKG+ +Y Sbjct: 92 LFSVPLLFGLLLPDQALGSDMAAKKGMIYTYPNPDVRRKTEERNAPAVSGMEKHGTNDDL 151 Query: 123 -IADEAAEHVKFNAASPYLEEFAELAGKLHAQPVIEVYPEIFSETLGAIDLYKQQFEGKS 181 A++ A + +F Y EFAELA +L+ PVI V P+IFSET+GA+D+YKQ F+GK+ Sbjct: 152 AAAEDIARNERFVPKDIYSVEFAELAKRLYTLPVIRVEPDIFSETVGAMDMYKQHFQGKA 211 Query: 182 ITVTGFLYRESGKSIKPVYAVSRFLVQCCTADATPLGILLDPRTQISLPADTWIEVRGKL 241 ITV GF++R+ G + +AVSRFLV CCTADA P G+++ S D W+++ G + Sbjct: 212 ITVQGFVFRD-GHMNEDAFAVSRFLVMCCTADAVPFGVIVRDANASSFANDAWVQIDGTI 270 Query: 242 QLSSYMGKQVMEITPESINPVPQPSTPYVYTNADSVAAWAEIRQSGIKAE 291 Q+++ GK+ ++I E I P+ QPS+PY++TN DSVA + E+ + I+ + Sbjct: 271 QVANVDGKETLQIQAERIQPIEQPSSPYIFTNPDSVAEFDELYSNDIETK 320 >C0ZBD5.1 C0ZBD5_BREBN Conserved hypothetical membrane protein Length = 330 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 139/297 (46%), Gaps = 53/297 (17%) Query: 32 DALHYYVAPKLARWIRLCPVPLSLMALSLGIQALFGKSARLCDCE--HRLPRSGLNSVML 89 +AL +Y+AP+L + + L+L+ + Q G S CDCE H++PR+ + S ++ Sbjct: 31 EALSHYLAPRLHMFSYVTLAILALLTMVSIRQIFVGSSVYDCDCEEQHKVPRTPMGSFLV 90 Query: 90 YXXXXXXXXXXXXXXDRSLGSAAAAKKGISL-----SYIAD-------EAAEHVKFNA-- 135 Y D+ LGS A K+GI+L +AD A E+VK A Sbjct: 91 YGLFVLPIVMGFFMPDKILGSDVAEKRGITLLSNDVRKLADVTANANVNATENVKQTAGV 150 Query: 136 ---ASP---------------------------------YLEEFAELAGKLHAQPVIEVY 159 A P + + + ++A LH QPVIE+ Sbjct: 151 KEDAEPSIKPQPEATNQVAIPPVQATDDEQLRQRFSNGGFGDFYTDIAVFLHKQPVIELN 210 Query: 160 PEIFSETLGAIDLYKQQFEGKSITVTGFLYRESGKSIKPVYAVSRFLVQCCTADATPLGI 219 ++F + L ++LY ++F GK + GF+YR+ + K + V+RF V CCTAD++ G+ Sbjct: 211 DKMFLDGLTTMELYAKEFAGKELETFGFVYRQPDFT-KQQFVVARFSVTCCTADSSVYGV 269 Query: 220 LLDPRTQISLPADTWIEVRGKLQLSSYMGKQVMEITPESINPVPQPSTPYVYTNADS 276 L++ D+W++VRGKL+L G ++ + + V P PYVY + +S Sbjct: 270 LVEKEDADKWKKDSWVKVRGKLELRQVEGYDMLVLKASQVEAVSAPKDPYVYYSFES 326 >Q848Z8.1 Q848Z8_BACME Putative uncharacterized protein Length = 320 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 115/277 (41%), Gaps = 47/277 (16%) Query: 37 YVAPKLARWIRLCPVPLSLMALSLGIQALFGKSAR---LCDCEH-RLPRSGLNSVMLYXX 92 Y+APK+ +I L LGI ++ S C+C H + + + + +Y Sbjct: 36 YIAPKMMPFILFSSGTFFL----LGIIQIWRSSVNKDLTCECSHDHMEKGKIRTTFIYSL 91 Query: 93 XXXXXXXXXXXXDRSLGSAAAAKKGISLSYIADEA----AEHVKFNAASPYLEE------ 142 + +L S+ A K+G+S S + A+ K + LE+ Sbjct: 92 FLLPIMSGFLFSNHTLDSSVAVKRGLSFSVNTSDNQQQPADDEKIEVTNSELEKDTNDLL 151 Query: 143 ---------------------------FAEL-AGKLHAQPVIEVYPEIFSETLGAIDLYK 174 F EL KL QP I + + + I+ Sbjct: 152 SGDSDETPKNVPTTHQNSIAAKVAPKGFYELLEKKLVKQPKISINDTDYIPVMNIIENNT 211 Query: 175 QQFEGKSITVTGFLYRESGKSIKPVYAVSRFLVQCCTADATPLGILLDPRTQISLPADTW 234 QF GK I V GF+YRE G + V+RF + CC ADA+ G+L +L DTW Sbjct: 212 NQFIGKKIEVNGFVYREKGFKDNQ-FVVARFGISCCVADASVYGLLSTLENASALKKDTW 270 Query: 235 IEVRGKLQLSSYMGKQVMEITPESINPVPQPSTPYVY 271 + ++G L+ ++Y G+ V + + I + QP+TPYVY Sbjct: 271 VHIKGVLKKTTYNGESVPYVQVQQIESIHQPNTPYVY 307 >C2R6E0.1 C2R6E0_BACCE Putative uncharacterized protein Length = 294 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 30/262 (11%) Query: 34 LHYYVAPKLARWIRLCPVPLSLMALSLGIQALFG---KSARLCDC--EHRLPRSGLNSVM 88 ++ ++APK+ ++ + V + L GI ++G + C+C H +SG+ S Sbjct: 34 IYNFIAPKMIKFTYIAFVVI----LIFGIVQVWGDGREKQHDCNCCKHHTTSKSGIKSFF 89 Query: 89 LYXXXXXXXXXXXXXXDRSLGSAAAAKKGISLSYIA------DEAAEHVKF--------- 133 +Y ++ + A K+G++ S + ++ E V F Sbjct: 90 VYVLFVVPIVSAFLFGSVTIDGSLAGKRGMNQSVQSRSLERNEKEGEQVNFDGREVSVDP 149 Query: 134 ----NAASPYLEEFAELAGKLHAQPVIEVYPEIFSETLGAIDLYKQQFEGKSITVTGFLY 189 N A+ Y E ++ + Q ++V + + +T+ I F+GK IT GF+Y Sbjct: 150 EETSNLATTYKTE-EQVVKSMLGQRKLQVKDKDYVQTMNVIGQNVNWFKGKEITFLGFIY 208 Query: 190 RESGKSIKPVYAVSRFLVQCCTADATPLGILLDPRTQISLPADTWIEVRGKLQLSSYMGK 249 ++ + V V+R+ + CC ADA+ G+++ + +P +TW+++ G L ++Y G Sbjct: 209 KDKDVTGNKV-VVARYGITCCIADASVWGMIVTGKNIEKIPEETWVKITGLLDETTYKGT 267 Query: 250 QVMEITPESINPVPQPSTPYVY 271 + I + +P+ PYVY Sbjct: 268 VFPLVKVNKIEKINKPTDPYVY 289 >B7HIC0.1 B7HIC0_BACC4 Putative uncharacterized protein Length = 294 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 30/262 (11%) Query: 34 LHYYVAPKLARWIRLCPVPLSLMALSLGIQALFG---KSARLCDC--EHRLPRSGLNSVM 88 ++ ++APK+ ++ + V + L GI ++G + C+C H +SG+ S Sbjct: 34 IYNFIAPKMIKFTYIAFVVI----LIFGIVQVWGDGREKQHDCNCCKHHTTSKSGIKSFF 89 Query: 89 LYXXXXXXXXXXXXXXDRSLGSAAAAKKGISLSYIA------DEAAEHVKF--------- 133 +Y ++ + A K+G++ S A ++ + VKF Sbjct: 90 VYVLFVVPIVSAFLFGSVTIDGSLAGKRGMNQSVQARSLERNEKEGKQVKFDGREVSVDP 149 Query: 134 ----NAASPYLEEFAELAGKLHAQPVIEVYPEIFSETLGAIDLYKQQFEGKSITVTGFLY 189 N A+ Y E ++ + Q ++V + + +T+ I F+GK IT GF+Y Sbjct: 150 EETSNLATTYKTE-EQVVKSMLGQRKLQVKDKDYVQTMNVIGQNVNWFKGKEITFLGFIY 208 Query: 190 RESGKSIKPVYAVSRFLVQCCTADATPLGILLDPRTQISLPADTWIEVRGKLQLSSYMGK 249 ++ + V+R+ + CC ADA+ G+++ + +P +TW+++ G L ++Y G Sbjct: 209 KDKDVTGNKA-VVARYGITCCIADASVWGMIVTGKNIEKIPEETWVKITGLLDETTYKGT 267 Query: 250 QVMEITPESINPVPQPSTPYVY 271 + I + +P+ PYVY Sbjct: 268 VFPLVKVNKIEKINKPTDPYVY 289 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,446,168,480 Number of extensions: 52946540 Number of successful extensions: 121496 Number of sequences better than 1.0e-05: 209 Number of HSP's gapped: 121413 Number of HSP's successfully gapped: 211 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)