BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0028.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJE0.1 B3KJE0_9BACI Permease                                         92   2e-17
Q848W5.1 Q848W5_BACME Putative uncharacterized protein                 88   2e-16
C5DAK7.1 C5DAK7_9BACI Permease                                         85   2e-15
C2Y900.1 C2Y900_BACCE Putative uncharacterized protein                 84   3e-15
C3FIG1.1 C3FIG1_BACTB Putative uncharacterized protein                 84   3e-15

>B3KJE0.1 B3KJE0_9BACI Permease
          Length = 336

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 61/79 (77%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMG +++LSLCSTSDAFVAS F HTF  G L++F+VLGPMLDFK+ LML + FKT+F + 
Sbjct: 255 MMGFAFILSLCSTSDAFVASAFTHTFTVGPLVSFLVLGPMLDFKSLLMLSATFKTKFVIG 314

Query: 61  LFFLIISAVFTGSVLASLL 79
           L  L+I+ VF GSV  + L
Sbjct: 315 LSLLVITLVFIGSVTVNAL 333


>Q848W5.1 Q848W5_BACME Putative uncharacterized protein
          Length = 328

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 54/70 (77%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMG +YVLSLCS +DAFVAS+F HTF   +LLAF++ GPM+DFKN++MLLS F  RFA  
Sbjct: 248 MMGFAYVLSLCSEADAFVASSFSHTFSPTALLAFLLYGPMMDFKNTIMLLSFFNKRFAFS 307

Query: 61  LFFLIISAVF 70
           L F+I   V+
Sbjct: 308 LIFIITVIVY 317


>C5DAK7.1 C5DAK7_9BACI Permease
          Length = 288

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 54/73 (73%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MM L++VLSLCS +DAF+A++F +TF  G+L AF+V GPMLD KN+LMLL  FKTRF L 
Sbjct: 213 MMALAFVLSLCSEADAFIAASFQNTFSFGALAAFLVYGPMLDIKNTLMLLQSFKTRFVLV 272

Query: 61  LFFLIISAVFTGS 73
           L   I   VF GS
Sbjct: 273 LIMYITIFVFIGS 285


>C2Y900.1 C2Y900_BACCE Putative uncharacterized protein
          Length = 370

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 54/71 (76%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMG  YVLS+CS +DAF+A++F H F   +LLAF+V GPMLD KN+LML + F+ RF  +
Sbjct: 293 MMGFGYVLSICSAADAFIAASFGHVFSVKALLAFLVFGPMLDMKNTLMLFAYFQKRFVFF 352

Query: 61  LFFLIISAVFT 71
           L  ++I++V+T
Sbjct: 353 LIGIVIASVYT 363


>C3FIG1.1 C3FIG1_BACTB Putative uncharacterized protein
          Length = 330

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 54/71 (76%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMG  YVLS+CS +DAF+A++F H F   +LLAF+V GPMLD KN+LML + F+ RF  +
Sbjct: 253 MMGFGYVLSICSAADAFIAASFGHVFSVKALLAFLVFGPMLDMKNTLMLFAYFQKRFVFF 312

Query: 61  LFFLIISAVFT 71
           L  ++I++V+T
Sbjct: 313 LIGIVIASVYT 323


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.335    0.143    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 375,168,520
Number of extensions: 11006249
Number of successful extensions: 54366
Number of sequences better than 1.0e-05: 294
Number of HSP's gapped: 54386
Number of HSP's successfully gapped: 294
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 125 (52.8 bits)