BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0027.p (252 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJE0.1 B3KJE0_9BACI Permease 169 2e-40 B1DJ53.1 B1DJ53_9BACL Permease 165 3e-39 C0ZBD4.1 C0ZBD4_BREBN Conserved hypothetical membrane protein 152 2e-35 Q848W5.1 Q848W5_BACME Putative uncharacterized protein 144 8e-33 C2W6H5.1 C2W6H5_BACCE Putative uncharacterized protein 139 3e-31 >B3KJE0.1 B3KJE0_9BACI Permease Length = 336 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 137/243 (56%), Gaps = 11/243 (4%) Query: 7 LKTLPLLIPAAFLITACTLWLPGHPQVLNNAFTEAFKTGFIGIXXXXXXXXXXXXXXXXX 66 K LP ++P F+I T+WL + + + KT F GI Sbjct: 7 FKMLPFILPLVFVIPVLTIWLQRDLNPIPSQDLQQIKTVFTGIFLEALPFILLGVLLSSL 66 Query: 67 XRVFVPDEMISRWIPRRPLPAILCGCLLGILFPVCECGMIPLVRRLMHKGMPLYVAIVFI 126 ++FV ++ + R P+ P+ +L +LGILFP+CECGMIP+VRRLM KGMP Y+A+ FI Sbjct: 67 LQLFVQEQWVRRLTPKNPVVGVLFASMLGILFPICECGMIPVVRRLMLKGMPAYIAVTFI 126 Query: 127 LSGPILNPVVYGATLTAFRAHPELAYARMGLXXXXXXXXXXXXXXTVRKTPLRLSIARES 186 LSGPILNP+V+ +T+ AFR+HPE+ RMGL + +PL+ S+ +E Sbjct: 127 LSGPILNPIVFASTIMAFRSHPEVTIGRMGLAFAVAVTTGLLVYVFSKSSPLKRSL-QEF 185 Query: 187 GEPHEQNTRGGKL--------AAVFVHTSDEFFEMGKYLIIGCLLTSGIQTFMDQGSLAA 238 E + +++G +L ++FVH DE EM KYL++G LT+ IQ+F+ + L A Sbjct: 186 AE--QGSSKGERLLHEHPKTWRSMFVHAGDELIEMCKYLVLGAFLTACIQSFIPREELLA 243 Query: 239 IGG 241 +G Sbjct: 244 LGN 246 >B1DJ53.1 B1DJ53_9BACL Permease Length = 354 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 132/250 (52%), Gaps = 28/250 (11%) Query: 19 LITACTLWLPGHP---QVLNNAFTEAFKTGFIGIXXXXXXXXXXXXXXXXXXRVFVPDEM 75 L+ C L L G P +L + + FK F+ I +VFV DEM Sbjct: 18 LVMVC-LILAGQPWSLALLESDGAQEFKIVFLSIILEAFPFILLGVIFSALLQVFVTDEM 76 Query: 76 ISRWIPRRPLPAILCGCLLGILFPVCECGMIPLVRRLMHKGMPLYVAIVFILSGPILNPV 135 + + P+ + IL G LLG++FP+CECGMIP+VRRL+ KGMP Y+ IV++L+GPI+NP+ Sbjct: 77 VRKLTPKHHMVGILFGALLGLVFPLCECGMIPVVRRLIRKGMPAYIGIVYLLAGPIINPI 136 Query: 136 VYGATLTAFRAHPELAYARMGLXXXXXXXXXXXXXXTVRKTPLRLSIARESGEPHEQN-- 193 V+ +T AFR+ P++AY R+ + ++ +PL+ S A S HE N Sbjct: 137 VFTSTYAAFRSEPQMAYDRLIIAFIVTVIVGLLLHRFMKDSPLKESSANISAHRHEHNHD 196 Query: 194 ----------------------TRGGKLAAVFVHTSDEFFEMGKYLIIGCLLTSGIQTFM 231 + +L+A H SDEFF+MGKYLI G LLT+ IQ+F+ Sbjct: 197 NDRNCDHEHHNHQTHEHSSNPVKKSWRLSATLSHASDEFFDMGKYLIFGALLTAVIQSFI 256 Query: 232 DQGSLAAIGG 241 D+ + A+ Sbjct: 257 DRQAFEAVAD 266 >C0ZBD4.1 C0ZBD4_BREBN Conserved hypothetical membrane protein Length = 334 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 114/218 (52%), Gaps = 25/218 (11%) Query: 24 TLWLPGHPQVLNNAFTEAFKTGFIGIXXXXXXXXXXXXXXXXXXRVFVPDEMISRWIPRR 83 ++WL P VL F AF + FV +E + RW P+ Sbjct: 54 SIWLEAIPFVLLGVFFSAF------------------------IQTFVTEEQVRRWTPKH 89 Query: 84 PLPAILCGCLLGILFPVCECGMIPLVRRLMHKGMPLYVAIVFILSGPILNPVVYGATLTA 143 PL A+ LLG LFPVCEC +IP+VRRL+ KGMPL V IVF+L+GPI+NPVV +T A Sbjct: 90 PLVALPFAGLLGFLFPVCECAIIPVVRRLIQKGMPLSVGIVFLLAGPIVNPVVLSSTYVA 149 Query: 144 FRAHPELAYARMGLXXXXXXXXXXXXXXTVRKTPLRLSIARE-SGEPHEQNTRGGKLAAV 202 F PE+A R V+K P+RL + + S E GKL++ Sbjct: 150 FARQPEMALYRGVAGFVVALIVGMLVFLFVKKNPIRLGMESQISHEADHVKATSGKLSST 209 Query: 203 FVHTSDEFFEMGKYLIIGCLLTSGIQTFMDQGSLAAIG 240 F H DEFF+MGKYL+ G +++ +Q ++ + +L IG Sbjct: 210 FAHAVDEFFDMGKYLLFGAFISALLQVYISRDTLMDIG 247 >Q848W5.1 Q848W5_BACME Putative uncharacterized protein Length = 328 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 3/181 (1%) Query: 68 RVFVPDEMISRWIPRRPLPAILCGCLLGILFPVCECGMIPLVRRLMHKGMPLYVAIVFIL 127 +VFV +E I R IP+ P A+L L+ L PVCEC +IP++RRL+ KGMPL++ IV ++ Sbjct: 69 QVFVSEEFIQRLIPKNPYIALLPAVLVSALLPVCECAIIPVIRRLLKKGMPLHIGIVILV 128 Query: 128 SGPILNPVVYGATLTAFRAHPELAYARMGLXXXXXXXXXXXXXXTVRKTPLRLSIARESG 187 PILNPVV+ AT AF+++ + Y+RMGL + + + Sbjct: 129 GAPILNPVVFAATFYAFQSNTSIVYSRMGLAVVACLLIGLSVYFFFKNSN---QLRHVHV 185 Query: 188 EPHEQNTRGGKLAAVFVHTSDEFFEMGKYLIIGCLLTSGIQTFMDQGSLAAIGGXXXXRS 247 HE+ G KL H DEFF+MGKYL+ G L+ S QTF+D+ + + S Sbjct: 186 HEHEEANVGNKLKQTLYHAGDEFFDMGKYLLFGALVASLFQTFLDRQLVTNLASNDYTSS 245 Query: 248 A 248 A Sbjct: 246 A 246 >C2W6H5.1 C2W6H5_BACCE Putative uncharacterized protein Length = 333 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 7/174 (4%) Query: 68 RVFVPDEMISRWIPRRPLPAILCGCLLGILFPVCECGMIPLVRRLMHKGMPLYVAIVFIL 127 +VFV +EMI + +P+ + A++ +G+LFP+CEC +IP+VRRL+ KG+P +V +V ++ Sbjct: 79 QVFVTEEMIQKILPKSAIVAMVPAAFVGVLFPMCECVIIPVVRRLIQKGLPSHVGMVILV 138 Query: 128 SGPILNPVVYGATLTAFRAHPELAYARMGLXXXXXXXXXXXXXXTVRKTPLRLSIARESG 187 S PILNP+V+ +T AFR +P + YAR GL R SI +E Sbjct: 139 SAPILNPIVFLSTYYAFRTNPNVIYARFGLALFVALLIGLVVYYVYRNK----SILKEQK 194 Query: 188 E-PHEQNTRGGKLAAVFVHTSDEFFEMGKYLIIGCLLTSGIQTFMDQGSLAAIG 240 PH++ + + V H DEFF+ GKYL+IG L S QTF+D+ LA I Sbjct: 195 VIPHDEKKKSWR--DVISHGVDEFFDTGKYLLIGAFLASLFQTFLDRNVLAEIA 246 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,327,637,512 Number of extensions: 46996917 Number of successful extensions: 126169 Number of sequences better than 1.0e-05: 347 Number of HSP's gapped: 126004 Number of HSP's successfully gapped: 347 Length of query: 252 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 120 Effective length of database: 1,817,122,223 Effective search space: 218054666760 Effective search space used: 218054666760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)