BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0025.p
         (172 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJE2.1 B3KJE2_9BACI Cobalamin synthesis protein P47K                 99   9e-20
C0ZHD3.1 C0ZHD3_BREBN Putative uncharacterized protein                 80   6e-14
C4WBJ4.1 C4WBJ4_STAWA Cobalamin synthesis protein/P47K family pr...    76   1e-12
B3KIM3.1 B3KIM3_9BACI Cobalamin synthesis protein P47K                 74   5e-12
Q8CQD6.1 Q8CQD6_STAES Cobalamin synthesis related protein CobW         74   7e-12

>B3KJE2.1 B3KJE2_9BACI Cobalamin synthesis protein P47K
          Length = 369

 Score = 99.4 bits (246), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 1/137 (0%)

Query: 16  KIPVIIXXXXXXXXXXXXXXXXXXESKARGLTPGIVMNELGKKDVDGYILE-EHAGANVE 74
           KIPV++                   +  R     ++MNE+G++DVDG IL  E     +E
Sbjct: 3   KIPVVLISGFLGSGKTTLLLRLLAYAAKRQWRTAVLMNEMGEQDVDGDILSGEMPDLPIE 62

Query: 75  KLLDGCVCCSRKDELPRTLELLLARRPDVIYIELTGVADPEEIAKSLLVPALSGRLVLHY 134
           KLLDGC+CC+++DEL + L+ LL ++PD+++IE TGVA+PE+I + L  P+L  R+ +  
Sbjct: 63  KLLDGCICCTKRDELGQALKSLLDQKPDLVFIETTGVANPEQILEDLQDPSLVDRISIRG 122

Query: 135 SITVLDAENALEYGRRF 151
            I + D    LEY   F
Sbjct: 123 KIALADCSKFLEYNSFF 139


>C0ZHD3.1 C0ZHD3_BREBN Putative uncharacterized protein
          Length = 338

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 50  IVMNELGKKDVDGYILEEHAGANVEKLLDGCVCCSRKDELPRTL-ELLLARRPDVIYIEL 108
           ++MNE+G++D+DG  L+   G  V+K+LDGC+CCS K EL   L +++    PD I IE 
Sbjct: 36  VLMNEMGEEDIDGEQLQGF-GFPVKKMLDGCICCSIKGELTEGLKDIMNTIAPDRILIET 94

Query: 109 TGVADPEEIAKSLLVPALSGRLVLHYSITVLDAENALEYGRRF 151
           TGVADP ++  ++  P L  RL L  +I+V+DA   L+   RF
Sbjct: 95  TGVADPLDVIDTITHPELYDRLELKGTISVVDASRFLDLNSRF 137


>C4WBJ4.1 C4WBJ4_STAWA Cobalamin synthesis protein/P47K family protein
          Length = 309

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 40  ESKARGLTPGIVMNELGKKDVDGYILEEHAGANVEKLLDGCVCCSRKDELPRTL-ELLLA 98
           E+ A+GL P ++MNE GK+ VDG ++++    N  +L +GC+CC+ K ++   L +L L 
Sbjct: 24  EAVAQGLQPAVIMNEFGKQSVDGQLIDQKIPLN--ELTEGCICCAMKADVSDQLHQLYLD 81

Query: 99  RRPDVIYIELTGVADPEEIAKSLLVPALSGRLVLHYSITVLDAE 142
            +PD+++IE +G+A+P  +  + L P L+    + + + ++DA+
Sbjct: 82  YQPDIVFIECSGIAEPLAVVDACLTPILAPFTSIKHMLGIVDAQ 125


>B3KIM3.1 B3KIM3_9BACI Cobalamin synthesis protein P47K
          Length = 356

 Score = 73.9 bits (180), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 3/106 (2%)

Query: 42  KARGLTPGIVMNELGKKDVDGYILEEHAGANVEKLLDGCVCCSRKDELPRTLELLLAR-R 100
           K +GL P IVMNE+G+ +++G   +E       ++L GC+CC+ + +L   + +L+ R R
Sbjct: 30  KQQGLRPAIVMNEIGEVNIEGLAADE--AVPTAEMLSGCICCTIRSDLSSEIAMLIQRER 87

Query: 101 PDVIYIELTGVADPEEIAKSLLVPALSGRLVLHYSITVLDAENALE 146
           PDVI IE TG+A+P EI  +    +L  R+ +   ITV+DA + L 
Sbjct: 88  PDVIVIEATGIANPMEILDATAEASLYMRIDVKKLITVVDAAHLLH 133


>Q8CQD6.1 Q8CQD6_STAES Cobalamin synthesis related protein CobW
          Length = 293

 Score = 73.6 bits (179), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 44  RGLTPGIVMNELGKKDVDGYILEEHAGANVEKLLDGCVCCSRKDELPRTL-ELLLARRPD 102
             L P ++MNE GK+ VDG ++E      + ++ +GC+CC+ K ++ + L EL L  +PD
Sbjct: 28  NNLNPAVIMNEFGKRSVDGQLIER-PEVPMSEITEGCICCAMKSDVSQQLHELYLKYQPD 86

Query: 103 VIYIELTGVADPEEIAKSLLVPALSGRLVLHYSITVLDA 141
           +I+IE +GVA+P  +  +   P L+  + L   + ++DA
Sbjct: 87  IIFIECSGVAEPLAVVDACFTPVLAPFITLRSMVGIIDA 125


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 822,849,901
Number of extensions: 28363797
Number of successful extensions: 66330
Number of sequences better than 1.0e-05: 720
Number of HSP's gapped: 67019
Number of HSP's successfully gapped: 720
Length of query: 172
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 46
Effective length of database: 1,873,648,313
Effective search space: 86187822398
Effective search space used: 86187822398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)