BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0024.p
         (45 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ57.1 B3KJ57_9BACI 50S ribosomal protein L33                        80   4e-14
Q2B5W8.1 Q2B5W8_9BACI 50S ribosomal protein L33                        80   7e-14
B1HZM7.1 RL33_LYSSC 50S ribosomal protein L33                          78   2e-13
A3I6R2.1 A3I6R2_9BACI 50S ribosomal protein L33                        78   3e-13
A7Z6E9.1 RL332_BACA2 50S ribosomal protein L33 2                       78   3e-13

>B3KJ57.1 B3KJ57_9BACI 50S ribosomal protein L33
          Length = 49

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 42/45 (93%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          +TLACTETGDRNYTTTKNK+N P R+E++KY PRLKRVTLHRETR
Sbjct: 5  ITLACTETGDRNYTTTKNKRNHPERMELRKYCPRLKRVTLHRETR 49


>Q2B5W8.1 Q2B5W8_9BACI 50S ribosomal protein L33
          Length = 54

 Score = 79.7 bits (195), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          +TLACTETGDRNY T KNK+N P RLE+KKYSPRLKRVTLHRET+
Sbjct: 10 ITLACTETGDRNYITKKNKRNNPDRLELKKYSPRLKRVTLHRETK 54


>B1HZM7.1 RL33_LYSSC 50S ribosomal protein L33
          Length = 49

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          +TLACTETGD+NY TTKNK+N P RLE+KKYSPRLKR TLHRET+
Sbjct: 5  ITLACTETGDKNYITTKNKRNNPERLELKKYSPRLKRTTLHRETK 49


>A3I6R2.1 A3I6R2_9BACI 50S ribosomal protein L33
          Length = 49

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          +TLACTETGD+NY TTKNK+  P RLE+KKYSPRLKRVTLHRET+
Sbjct: 5  ITLACTETGDKNYITTKNKRTNPERLELKKYSPRLKRVTLHRETK 49


>A7Z6E9.1 RL332_BACA2 50S ribosomal protein L33 2
          Length = 49

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 40/45 (88%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          VTLACTETGDRNY TTKNK+  P RLEMKKYSPRLK+ TLHRET+
Sbjct: 5  VTLACTETGDRNYITTKNKRTNPDRLEMKKYSPRLKKYTLHRETK 49


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.126    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 258,596,428
Number of extensions: 5757531
Number of successful extensions: 10540
Number of sequences better than 1.0e-05: 521
Number of HSP's gapped: 10600
Number of HSP's successfully gapped: 521
Length of query: 45
Length of database: 3,060,696,203
Length adjustment: 19
Effective length of query: 26
Effective length of database: 2,881,696,918
Effective search space: 74924119868
Effective search space used: 74924119868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)