BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0023.p (405 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DMJ3.1 B1DMJ3_9BACL Cobalamin synthesis protein P47K 556 e-156 C0ZJT8.1 C0ZJT8_BREBN Putative uncharacterized protein yciC 526 e-147 P94400.1 YCIC_BACSU Putative metal chaperone yciC 520 e-146 B7GK25.1 B7GK25_ANOFW GTPase (G3E type), CobW/P47K subfamily 516 e-144 Q65ML4.1 Q65ML4_BACLD YciC 516 e-144 >B1DMJ3.1 B1DMJ3_9BACL Cobalamin synthesis protein P47K Length = 393 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 260/390 (66%), Positives = 315/390 (80%) Query: 1 MKPIPVTVLSGYLGSGKTTLLNHILHNRDGLKVAVIVNDMSEVNVDAGLVKSGNTLSRTE 60 MK IPVTVLSGYLG+GKTT+LNH+L+NR G+KVAVIVND+SEVN+DAGL+K G LSRT+ Sbjct: 1 MKKIPVTVLSGYLGAGKTTVLNHVLNNRQGMKVAVIVNDLSEVNIDAGLIKEGGGLSRTD 60 Query: 61 EKLVEMSNGCICCTLRDDLLREVHTLAAEGRFDYILIESSGISEPVPVAQTFTYANPELD 120 EKLVEMSNGCICCTLR+DLLREV LA +GRFDYILIES+G+ EPVPVAQTFTY + E Sbjct: 61 EKLVEMSNGCICCTLREDLLREVERLAMDGRFDYILIESTGVGEPVPVAQTFTYIDEEQG 120 Query: 121 IDLTALARLDTMVTVVDANRFWHDFGSGDSLVDRGTTAGEGDSRDIVDLLIDQIETCDVL 180 IDL+ +LD MVTVVDANRFWHDF SG+SL+ R G D+R++VDLLIDQIE CDVL Sbjct: 121 IDLSRFCQLDCMVTVVDANRFWHDFSSGESLLARSQAVGNDDTREVVDLLIDQIEFCDVL 180 Query: 181 LLNKCDLVEEQELNKLEAVLRKLQPSAKIIRTVKGIVDPKEVLNTGRFDFERTSMSSGWI 240 LLNKCD++EE EL +LE VLRKLQP AK+IRTV G V P E+LNTG FDF+ S S+GW+ Sbjct: 181 LLNKCDMIEENELVELEGVLRKLQPRAKLIRTVNGQVHPAEILNTGLFDFDEASQSAGWV 240 Query: 241 AELNKEEHTPETEEYGISSFVYRRKVPFHPQRLSFFFSNWPEEVVRAKGLVWLAAKGDLA 300 EL+K EHTPETEEYGISSFVY R PFHP+RL + NWPEEVVRAKG++W+A++ ++ Sbjct: 241 KELSKPEHTPETEEYGISSFVYERVKPFHPERLKKWLKNWPEEVVRAKGVMWVASRNNIG 300 Query: 301 ASLSQAGPSIQFGPAGYWLASLPEEQQLEVLATEPDMKARWDETWGDRMNEVVFIGVGIN 360 ++SQAGPSIQFGP+GYW+ASLP+ +Q L P++ W +GDR+N+VVFIG+ ++ Sbjct: 301 QNISQAGPSIQFGPSGYWIASLPQAEQEMYLREYPELHDSWSPEYGDRINKVVFIGIKMD 360 Query: 361 RAGIEARLDRCLLNEEEMQQDWSRFNNPLP 390 R I LD CLL E EM +DWSRF + LP Sbjct: 361 RDSINETLDECLLTESEMLEDWSRFKDTLP 390 >C0ZJT8.1 C0ZJT8_BREBN Putative uncharacterized protein yciC Length = 404 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 249/389 (64%), Positives = 304/389 (78%) Query: 2 KPIPVTVLSGYLGSGKTTLLNHILHNRDGLKVAVIVNDMSEVNVDAGLVKSGNTLSRTEE 61 K IPVTVLSGYLG+GKTT+LNH+L+NRDGL+VAVIVND+SEVNVDA L+ SG+ LSR +E Sbjct: 6 KKIPVTVLSGYLGAGKTTILNHVLNNRDGLRVAVIVNDLSEVNVDASLIISGSGLSRVDE 65 Query: 62 KLVEMSNGCICCTLRDDLLREVHTLAAEGRFDYILIESSGISEPVPVAQTFTYANPELDI 121 K+VE+SNGCICCTLR+DLL EV LA EGR+DYILIES+G+ EPVPVAQTFTY + E I Sbjct: 66 KVVELSNGCICCTLREDLLTEVERLALEGRYDYILIESTGVGEPVPVAQTFTYVDEENGI 125 Query: 122 DLTALARLDTMVTVVDANRFWHDFGSGDSLVDRGTTAGEGDSRDIVDLLIDQIETCDVLL 181 +L++L RLDTMVTVVDA RFWHDF SG++L+DRG GE D R++ DLLIDQIE CDVL+ Sbjct: 126 NLSSLCRLDTMVTVVDAYRFWHDFSSGENLLDRGQAVGEEDIREVADLLIDQIEFCDVLI 185 Query: 182 LNKCDLVEEQELNKLEAVLRKLQPSAKIIRTVKGIVDPKEVLNTGRFDFERTSMSSGWIA 241 LNKCD V +L +LEA+LRKLQP A+ IR V+G VDP+ +LNT FDFE S S+GW+A Sbjct: 186 LNKCDRVAPDDLIQLEAILRKLQPHARFIRAVRGQVDPQAILNTHLFDFETASQSAGWLA 245 Query: 242 ELNKEEHTPETEEYGISSFVYRRKVPFHPQRLSFFFSNWPEEVVRAKGLVWLAAKGDLAA 301 EL KE HTPET+EYGISSFVYR + PFHP R + +WPEE+VRAKG WLA + D+A Sbjct: 246 ELQKEVHTPETDEYGISSFVYRSRRPFHPARFEKWLEDWPEEIVRAKGFFWLATRNDVAM 305 Query: 302 SLSQAGPSIQFGPAGYWLASLPEEQQLEVLATEPDMKARWDETWGDRMNEVVFIGVGINR 361 +LSQAGPSI+ G AGYW A+L E+Q +L EPD + W GDR E+VFIG+ +++ Sbjct: 306 TLSQAGPSIEIGTAGYWTAALSAEEQQAILVEEPDWQQTWHPVHGDRTTELVFIGIDLSQ 365 Query: 362 AGIEARLDRCLLNEEEMQQDWSRFNNPLP 390 I LD CLL +EE + DWS +PLP Sbjct: 366 EQIVKHLDACLLTDEEYEADWSNLPDPLP 394 >P94400.1 YCIC_BACSU Putative metal chaperone yciC Length = 397 Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/393 (63%), Positives = 302/393 (76%), Gaps = 2/393 (0%) Query: 1 MKPIPVTVLSGYLGSGKTTLLNHILHNRDGLKVAVIVNDMSEVNVDAGLVKSGNTLSRTE 60 MK IPVTVLSGYLG+GKTTLLN IL NR+GLK+AVIVNDMSEVN+DAGLVK LSRT+ Sbjct: 1 MKKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVNIDAGLVKQEGGLSRTD 60 Query: 61 EKLVEMSNGCICCTLRDDLLREVHTLAAEGRFDYILIESSGISEPVPVAQTFTYANPELD 120 EKLVEMSNGCICCTLR+DLL EV LA +GRFDYI+IES+GISEP+PVAQTF+Y + E+ Sbjct: 61 EKLVEMSNGCICCTLREDLLIEVEKLAKDGRFDYIVIESTGISEPIPVAQTFSYIDEEMG 120 Query: 121 IDLTALARLDTMVTVVDANRFWHDFGSGDSLVDRGTTAGEGDSRDIVDLLIDQIETCDVL 180 IDLT +LDTMVTVVDANRFWHD+ SG+SL+DR GE D R+I DLLIDQIE CDVL Sbjct: 121 IDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGEKDEREIADLLIDQIEFCDVL 180 Query: 181 LLNKCDLVEEQELNKLEAVLRKLQPSAKIIRTVKGIVDPKEVLNTGRFDFERTSMSSGWI 240 +LNKCDLV EQEL +LE VLRKLQP A+ IR+VKG V P+E+L+TG F+FE S S+GWI Sbjct: 181 ILNKCDLVSEQELEQLENVLRKLQPRARFIRSVKGNVKPQEILHTGLFNFEEASGSAGWI 240 Query: 241 AELN--KEEHTPETEEYGISSFVYRRKVPFHPQRLSFFFSNWPEEVVRAKGLVWLAAKGD 298 EL EHTPETEEYGISSFVY+R++PFH R + P+ VVRAKG+VW A+ + Sbjct: 241 QELTAGHAEHTPETEEYGISSFVYKRRLPFHSTRFYRWLDQMPKNVVRAKGIVWCASHNN 300 Query: 299 LAASLSQAGPSIQFGPAGYWLASLPEEQQLEVLATEPDMKARWDETWGDRMNEVVFIGVG 358 LA +SQAGPS+ P YW+A+LP+ +Q +V EP++ WD +GDR+ ++VFIG Sbjct: 301 LALLMSQAGPSVTIEPVSYWVAALPKLEQEQVKQQEPEILEEWDPEFGDRLTQLVFIGTD 360 Query: 359 INRAGIEARLDRCLLNEEEMQQDWSRFNNPLPW 391 ++ I LD+CLL E E DWS F +P W Sbjct: 361 LDEETITKELDQCLLTEYEFDSDWSLFEDPFKW 393 >B7GK25.1 B7GK25_ANOFW GTPase (G3E type), CobW/P47K subfamily Length = 393 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/387 (63%), Positives = 305/387 (78%), Gaps = 2/387 (0%) Query: 4 IPVTVLSGYLGSGKTTLLNHILHNRDGLKVAVIVNDMSEVNVDAGLVKSGNTLSRTEEKL 63 IPVTVLSGYLGSGKTTLLNHIL+NRDGLK+AVIVNDMSEVN+DA L+K G SRTEEKL Sbjct: 3 IPVTVLSGYLGSGKTTLLNHILNNRDGLKIAVIVNDMSEVNIDAELIKQGG-FSRTEEKL 61 Query: 64 VEMSNGCICCTLRDDLLREVHTLAAEGRFDYILIESSGISEPVPVAQTFTYANPELDIDL 123 V++ NGCICCTLR+DL++EV L G DYI+IESSGISEP+PVAQTFTY + E IDL Sbjct: 62 VQIQNGCICCTLREDLMKEVEKLVNAGNIDYIVIESSGISEPIPVAQTFTYIDEEFGIDL 121 Query: 124 TALARLDTMVTVVDANRFWHDFGSGDSLVDRGTTAGEGDSRDIVDLLIDQIETCDVLLLN 183 T+ RLDTMVTVVDA+RFWHDF SG++L+DR E D R++VDLLIDQIE +VL+LN Sbjct: 122 TSKCRLDTMVTVVDAHRFWHDFASGETLLDRKQAIDETDVREVVDLLIDQIEFANVLILN 181 Query: 184 KCDLVEEQELNKLEAVLRKLQPSAKIIRTVKGIVDPKEVLNTGRFDFERTSMSSGWIAEL 243 K D + E++ ++LEA+LRKL P AKIIRT G V ++LNT FDFE+ S S+GWI EL Sbjct: 182 KIDCISEEDADELEALLRKLNPEAKIIRTTYGKVALHDILNTRLFDFEKASQSAGWIKEL 241 Query: 244 NKEEHTPETEEYGISSFVYRRKVPFHPQRLSFFFSNWPEEVVRAKGLVWLAAKGDLAASL 303 N EEHTPETEEYGISSFVYRR+ PFHP+RL + NWP E+VRAKG WLA++ ++ L Sbjct: 242 N-EEHTPETEEYGISSFVYRRRRPFHPERLMHWLENWPVEIVRAKGFFWLASRNNMCGLL 300 Query: 304 SQAGPSIQFGPAGYWLASLPEEQQLEVLATEPDMKARWDETWGDRMNEVVFIGVGINRAG 363 SQAGPSI AG W+A+ P ++ ++L EP+++A+W++T+GDRM E+VFIG+ ++ Sbjct: 301 SQAGPSIMLQGAGEWIATYPPHEREQILQQEPELRAKWNDTYGDRMTELVFIGIDMDEQA 360 Query: 364 IEARLDRCLLNEEEMQQDWSRFNNPLP 390 I + LD CLL +EEM +DWS F +PLP Sbjct: 361 ISSSLDTCLLTDEEMSKDWSTFVDPLP 387 >Q65ML4.1 Q65ML4_BACLD YciC Length = 399 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 253/395 (64%), Positives = 300/395 (75%), Gaps = 3/395 (0%) Query: 2 KPIPVTVLSGYLGSGKTTLLNHILHNRDGLKVAVIVNDMSEVNVDAGLVKSGNTLSRTEE 61 K IPVTVLSGYLG+GKTTLLNHIL NR GLKVAVIVNDMSEVN+DAGLVK G LSRT+E Sbjct: 3 KKIPVTVLSGYLGAGKTTLLNHILQNRQGLKVAVIVNDMSEVNIDAGLVKQGG-LSRTDE 61 Query: 62 KLVEMSNGCICCTLRDDLLREVHTLAAEGRFDYILIESSGISEPVPVAQTFTYANPELDI 121 KLVEMSNGCICCTLR+DLL EV LA +G DYI+IES+GISEP+PVAQTF+Y + EL I Sbjct: 62 KLVEMSNGCICCTLREDLLVEVEKLAKQGNIDYIVIESTGISEPIPVAQTFSYIDEELGI 121 Query: 122 DLTALARLDTMVTVVDANRFWHDFGSGDSLVDRGTTAGEGDSRDIVDLLIDQIETCDVLL 181 DLT RLDTMVTVVDANRFWHDF SGDSL+DR GE D RDI DLLIDQIE CDVL+ Sbjct: 122 DLTRFCRLDTMVTVVDANRFWHDFQSGDSLLDRKEAVGEEDERDIADLLIDQIEFCDVLI 181 Query: 182 LNKCDLVEEQELNKLEAVLRKLQPSAKIIRTVKGIVDPKEVLNTGRFDFERTSMSSGWIA 241 LNKCDLV E++L KLE VL+ LQP A IIR VKG VDPK VLNTG F+F+ S S+GWI Sbjct: 182 LNKCDLVSEEDLQKLEKVLKTLQPKANIIRAVKGEVDPKAVLNTGLFNFDEASGSAGWIR 241 Query: 242 ELNK--EEHTPETEEYGISSFVYRRKVPFHPQRLSFFFSNWPEEVVRAKGLVWLAAKGDL 299 ELN+ +HTPETEEYGISSFVY + PFH +R + + PE VVRAKG+ W A + L Sbjct: 242 ELNQGHHQHTPETEEYGISSFVYEARRPFHTERFYNWIHSLPENVVRAKGIAWCATRNTL 301 Query: 300 AASLSQAGPSIQFGPAGYWLASLPEEQQLEVLATEPDMKARWDETWGDRMNEVVFIGVGI 359 A +SQAGPS+ P YW+A+L + +Q ++L P++ W+E +GDR ++VFIG+ + Sbjct: 302 ALLMSQAGPSVSLEPISYWVAALSKPEQEQILRQNPELLKEWNEEFGDRHTKLVFIGLDL 361 Query: 360 NRAGIEARLDRCLLNEEEMQQDWSRFNNPLPWPAE 394 + + I A DRCLL + EM DWS ++P W E Sbjct: 362 SPSEITAEADRCLLTDSEMAADWSLLSDPFDWQIE 396 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,480,683,277 Number of extensions: 104509714 Number of successful extensions: 353558 Number of sequences better than 1.0e-05: 2349 Number of HSP's gapped: 347151 Number of HSP's successfully gapped: 2398 Length of query: 405 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 267 Effective length of database: 1,760,596,133 Effective search space: 470079167511 Effective search space used: 470079167511 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)