BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0022.p (230 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEM0.1 B3KEM0_9BACI ABC transporter related 312 2e-83 O34946.1 ADCC_BACSU Probable zinc transport system ATP-binding p... 274 4e-72 A7Z135.1 A7Z135_BACA2 YcdI 266 7e-70 B1DMJ0.1 B1DMJ0_9BACL ABC transporter related 248 2e-64 C2C4F4.1 C2C4F4_LISGR ABC superfamily ATP binding cassette trans... 239 1e-61 >B3KEM0.1 B3KEM0_9BACI ABC transporter related Length = 235 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 144/230 (62%), Positives = 176/230 (76%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 M+DV+FGYG + V++NLSL+I GQFIGI+GPN +PWSG++ + Sbjct: 6 MRDVMFGYGDQAVVENLSLDIHLGQFIGISGPNGAAKSTLLKLMLGLIKPWSGSIVFKRV 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 + +G +L++GYVPQQVASFNAGFPSKVIELVRSG Y RLG F RFT E+VERSL++V Sbjct: 66 LEDGSRLSVGYVPQQVASFNAGFPSKVIELVRSGRYGRLGLFKRFTSADYEIVERSLKEV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 MWEYR+RRIGELSGGQKQRIC+ARALAQ+PQVL+LDEP TGMD+ SR+ Y+L+ YV Sbjct: 126 GMWEYRHRRIGELSGGQKQRICVARALAQEPQVLILDEPTTGMDVSSRTDLYRLLNDYVK 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSCSAHFGPGA 230 + G TVIMVTH L+E PYLD V+ LER+E EGW+C VTN CSA FG A Sbjct: 186 DKGNTVIMVTHSLDEIGPYLDQVVHLERKENEGWRCSVTNLCSARFGQEA 235 >O34946.1 ADCC_BACSU Probable zinc transport system ATP-binding protein adcC EC=3.6.3.- Length = 231 Score = 274 bits (701), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 125/226 (55%), Positives = 161/226 (71%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 +KD+VFGY PV+D +SL+IE+G+F+GITGPN +PW GTVT++K Sbjct: 6 LKDIVFGYSHTPVLDKVSLDIESGEFVGITGPNGASKSTLIKVMLGMLKPWEGTVTISKR 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 TEG++L IGYVPQQ++SFNAGFPS V+ELV+SG Y + WF R +E VE++L+ V Sbjct: 66 NTEGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYTKGKWFKRLNEEDHLEVEKALKMV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 +MW+ R+R+IG+LSGGQKQ+ICIAR LA P +L+LDEP T +D SR GFY+ M H V Sbjct: 126 EMWDLRHRKIGDLSGGQKQKICIARMLASNPDLLMLDEPTTAVDYDSRKGFYEFMHHLVK 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSCSAHF 226 NH RTV+MVTH E + +LD VI LER E+ GWKCL NSC F Sbjct: 186 NHNRTVVMVTHEQNEVQQFLDKVIRLERGEKGGWKCLTWNSCDELF 231 >A7Z135.1 A7Z135_BACA2 YcdI Length = 231 Score = 266 bits (681), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 122/226 (53%), Positives = 157/226 (69%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 ++D+VFGY PV+D +SLEI++G+F+GITGPN RPW GT ++K+ Sbjct: 6 LQDIVFGYSHTPVLDGVSLEIKSGEFVGITGPNGASKSTLMKVMLGMLRPWEGTAEISKK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 G++L IGYVPQQ++SFNAGFPS V+ELV+SG Y + WF R + VE +L+ V Sbjct: 66 NAAGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYTKGKWFKRLNETDHHEVENALKMV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 +MWE+R+R+IG+LSGGQKQ+ICIAR LA P +L+LDEP T +D SR GFY+ M H V Sbjct: 126 EMWEFRHRKIGDLSGGQKQKICIARMLASNPDLLMLDEPTTAVDYESRQGFYEFMHHQVK 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSCSAHF 226 NH RTV+MVTH E + YLD VI LER E+ GWKCL NSC F Sbjct: 186 NHNRTVVMVTHEQNEVQQYLDKVIRLERGEKGGWKCLTWNSCDELF 231 >B1DMJ0.1 B1DMJ0_9BACL ABC transporter related Length = 239 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 113/230 (49%), Positives = 152/230 (66%), Gaps = 1/230 (0%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 ++DV FGYG P ++ ++E+ +G+FI +TG N PW G V+L+ Sbjct: 6 LQDVTFGYGDVPCLEMANIEVHSGEFIAVTGQNGASKSTLLKLALQLLHPWQGKVSLSPI 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRL-GWFGRFTKEQEELVERSLRQ 119 G+KLA+ YVPQQ+A+FN+GFPS+V E VRSG Y + W + ++E ++ + +++ Sbjct: 66 NVNGDKLAVAYVPQQIAAFNSGFPSQVTEFVRSGLYSQSRNWLRKLSQEAKQAADEAMKS 125 Query: 120 VDMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYV 179 + +WE RNRRIGELSGGQKQRICIARALA P + VLDEP TGMD SR FY+LMR + Sbjct: 126 MGVWELRNRRIGELSGGQKQRICIARALAMSPDMFVLDEPTTGMDKESRRDFYQLMREQI 185 Query: 180 SNHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSCSAHFGPG 229 +G+TV++VTH L E LD +ISLER E+ GWKC T SCS HF P Sbjct: 186 DQYGKTVVIVTHNLSEMDGMLDRIISLERREEGGWKCCTTTSCSGHFSPA 235 >C2C4F4.1 C2C4F4_LISGR ABC superfamily ATP binding cassette transporter, ABC protein Length = 234 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 109/228 (47%), Positives = 152/228 (66%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 + DV F Y EPV++N+S +++AG+F+ +TG N +P +G V L K+ Sbjct: 6 VDDVTFKYEEEPVLENISFQVKAGEFVILTGENGAAKTTLLRLVLGLLKPDNGAVKLAKK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 TEG +L GYVPQQ+ASFN GFPS V+ELV SG YP WF R +E + VE++L+ V Sbjct: 66 NTEGGRLLTGYVPQQIASFNVGFPSTVLELVTSGRYPNGKWFKRLREEDKMHVEKALKSV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 +MW+YR++RIGELSGGQKQRIC+AR A P +L+LDEP+T MD S++ FY L++H S Sbjct: 126 NMWDYRHKRIGELSGGQKQRICLARMFATDPDLLLLDEPSTAMDKESKARFYDLLKHESS 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSCSAHFGP 228 HG++++M+TH ++ Y D I L R+E W+C +SCSAH P Sbjct: 186 KHGKSILMITHDSDDMIDYADRHIRLVRKEDVPWRCFSMDSCSAHSKP 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,303,677,993 Number of extensions: 47403401 Number of successful extensions: 296661 Number of sequences better than 1.0e-05: 60567 Number of HSP's gapped: 267706 Number of HSP's successfully gapped: 62636 Length of query: 230 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 99 Effective length of database: 1,826,543,238 Effective search space: 180827780562 Effective search space used: 180827780562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)