BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0021.p (255 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEM1.1 B3KEM1_9BACI ABC-3 protein 336 9e-91 B1DMJ1.1 B1DMJ1_9BACL ABC-3 protein 275 2e-72 Q3Y1B2.1 Q3Y1B2_ENTFC ABC-3 219 2e-55 C2HEL1.1 C2HEL1_ENTFC Metal cation ABC superfamily ATP binding c... 219 2e-55 Q839U3.1 Q839U3_ENTFA ABC transporter, permease protein 214 9e-54 >B3KEM1.1 B3KEM1_9BACI ABC-3 protein Length = 275 Score = 336 bits (862), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 175/219 (79%), Positives = 199/219 (90%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 V+LMLRRQVLMADTLSHVSLAGVALGS L+L+PALSGFA+A+ G LVIEQLRR YRTY+E Sbjct: 28 VFLMLRRQVLMADTLSHVSLAGVALGSFLKLNPALSGFAMAMIGALVIEQLRRVYRTYTE 87 Query: 61 LPVAIIMTSGLALAVVLMSLKQNLSRSFSSYLFGSIVAVSDTQLGLIAIVAAVGLSYFIL 120 +PVAIIMTSGLAL+VVLMSL QNLS+SFSSYLFGSIVAVSDTQL LIA+VAAVG+ +F+ Sbjct: 88 VPVAIIMTSGLALSVVLMSLNQNLSKSFSSYLFGSIVAVSDTQLRLIAVVAAVGMIFFVG 147 Query: 121 LRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPASIA 180 LRRPLY+ FDEETA+ G+R LLSF FAV TGMTVAAAMPVVGVLLVSAL+VLPASIA Sbjct: 148 LRRPLYNFAFDEETAAASGMRVSLLSFLFAVFTGMTVAAAMPVVGVLLVSALIVLPASIA 207 Query: 181 LRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGT 219 LR+A+GF AA+ I++ VGL+GVFSGL ASYY+NTPPGGT Sbjct: 208 LRMATGFLAAMGIAVFVGLSGVFSGLAASYYLNTPPGGT 246 >B1DMJ1.1 B1DMJ1_9BACL ABC-3 protein Length = 294 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 138/250 (55%), Positives = 192/250 (76%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 VYL+LRRQ LMAD LSHVSLAGVA G+ L ++P+LSGF VA+ G + +E +R++Y+TYSE Sbjct: 26 VYLLLRRQALMADMLSHVSLAGVAAGTYLGINPSLSGFIVAVIGAIAVEYVRKAYKTYSE 85 Query: 61 LPVAIIMTSGLALAVVLMSLKQNLSRSFSSYLFGSIVAVSDTQLGLIAIVAAVGLSYFIL 120 L VAIIM GL+L+V+LM++ + +++SFSSYLFGS+VAV+ T+L ++ A +G +F L Sbjct: 86 LSVAIIMVGGLSLSVILMTMNKTVNKSFSSYLFGSVVAVNRTELMIMLAAALIGALFFFL 145 Query: 121 LRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPASIA 180 LRRPLY ++FDEE+A G+ +SF F+++TGM VAAAMP+VGVLLVSAL++LPA+++ Sbjct: 146 LRRPLYIVSFDEESARTSGIPVQWISFGFSIVTGMIVAAAMPIVGVLLVSALIILPAALS 205 Query: 181 LRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGTXXXXXXXXXXXXXXVQKLLAF 240 +R++S F+AAILIS+G+GLTG F+GLTASY ++TPPGGT ++KL A Sbjct: 206 VRISSSFTAAILISMGIGLTGTFTGLTASYELSTPPGGTIAFVLLLFLAAGLGLKKLFAL 265 Query: 241 QKRRSVRKSI 250 +RS R I Sbjct: 266 GSKRSSRMVI 275 >Q3Y1B2.1 Q3Y1B2_ENTFC ABC-3 Length = 274 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 116/248 (46%), Positives = 170/248 (68%), Gaps = 4/248 (1%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 V+L++RRQ LMADTLSHVSLAGVALG L L+P L+ V + +++E LR YRTYSE Sbjct: 28 VFLVIRRQSLMADTLSHVSLAGVALGFFLNLNPTLTTMLVVVLAAVILEYLRTIYRTYSE 87 Query: 61 LPVAIIMTSGLALAVVLMSLKQ-NLSRSFSSYLFGSIVAVSDTQLGLIAIV-AAVGLSYF 118 + +AI+M GLALA+VLM+L N + S SYLFGSIV ++ Q+ + I+ A+G+ +F Sbjct: 88 ISIAILMAGGLALALVLMNLSGGNSATSIQSYLFGSIVTITWEQVIFLGILFVAIGILFF 147 Query: 119 ILLRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPAS 178 L +RP+Y LTFDE+TA + G+ L+S F V+TG+ +A +P+ G LL+SA+MVLPA+ Sbjct: 148 -LFKRPMYVLTFDEDTAHVDGLPVHLMSMMFNVITGVAIAVMIPIAGALLISAIMVLPAA 206 Query: 179 IALRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGTXXXXXXXXXXXXXXVQKLL 238 I +R+ F+ I IS+ VG G+ SGLT+S+Y++TPPG T ++++L Sbjct: 207 IGMRLGKSFNVVIAISVCVGFLGMLSGLTSSFYLDTPPGATITLVFIALFLIVNIIKRIL 266 Query: 239 -AFQKRRS 245 AF+++ + Sbjct: 267 VAFRRKNN 274 >C2HEL1.1 C2HEL1_ENTFC Metal cation ABC superfamily ATP binding cassette transporter, membrane protein Length = 274 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 116/248 (46%), Positives = 170/248 (68%), Gaps = 4/248 (1%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 V+L++RRQ LMADTLSHVSLAGVALG L L+P L+ V + +++E LR YRTYSE Sbjct: 28 VFLVIRRQSLMADTLSHVSLAGVALGFFLNLNPTLTTMLVVVLAAVILEYLRTIYRTYSE 87 Query: 61 LPVAIIMTSGLALAVVLMSLKQ-NLSRSFSSYLFGSIVAVSDTQLGLIAIV-AAVGLSYF 118 + +AI+M GLALA+VLM+L N + S SYLFGSIV ++ Q+ + I+ A+G+ +F Sbjct: 88 ISIAILMAGGLALALVLMNLSGGNSATSIQSYLFGSIVTITWEQVIFLGILFVAIGILFF 147 Query: 119 ILLRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPAS 178 L +RP+Y LTFDE+TA + G+ L+S F V+TG+ +A +P+ G LL+SA+MVLPA+ Sbjct: 148 -LFKRPMYVLTFDEDTAHVDGLPVHLMSMMFNVITGVAIAVMIPIAGALLISAIMVLPAA 206 Query: 179 IALRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGTXXXXXXXXXXXXXXVQKLL 238 I +R+ F+ I IS+ VG G+ SGLT+S+Y++TPPG T ++++L Sbjct: 207 IGMRLGKSFNVVIAISVCVGFLGMLSGLTSSFYLDTPPGATITLVFIALFLIVNIIKRIL 266 Query: 239 -AFQKRRS 245 AF+++ + Sbjct: 267 VAFRRKNN 274 >Q839U3.1 Q839U3_ENTFA ABC transporter, permease protein Length = 279 Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 109/220 (49%), Positives = 156/220 (70%), Gaps = 1/220 (0%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 V+L++RRQ LMADTLSHVSLAGVALG +P L V I +++E LR Y TYSE Sbjct: 29 VFLVIRRQSLMADTLSHVSLAGVALGFFFNWNPNLMTLIVVIVAAIILEYLRMIYSTYSE 88 Query: 61 LPVAIIMTSGLALAVVLMSLKQ-NLSRSFSSYLFGSIVAVSDTQLGLIAIVAAVGLSYFI 119 + +AI+M+ GLALA+VLM+L N + S SYLFGSIV ++ Q+ ++AI+ V + F+ Sbjct: 89 ISIAILMSGGLALALVLMNLTGGNSAASIQSYLFGSIVTITWDQVVMLAILFVVLVLLFM 148 Query: 120 LLRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPASI 179 L +RP+Y LTFDE+TA + G+ +S F V+TG+ +A +P+ G LL+SA+MVLPA+I Sbjct: 149 LFKRPMYVLTFDEDTAHVDGLPIHWMSMLFNVITGVAIAVMIPIAGALLISAIMVLPAAI 208 Query: 180 ALRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGT 219 +R+ GF+ I+IS+ +GL G+ +GLT+SYY+ TPP + Sbjct: 209 GMRIGKGFNTVIIISVFMGLIGMLTGLTSSYYLETPPSAS 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.137 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,199,746,881 Number of extensions: 44080311 Number of successful extensions: 269457 Number of sequences better than 1.0e-05: 2279 Number of HSP's gapped: 267408 Number of HSP's successfully gapped: 2280 Length of query: 255 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 122 Effective length of database: 1,807,701,208 Effective search space: 220539547376 Effective search space used: 220539547376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)