BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0020.p (368 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEM2.1 B3KEM2_9BACI Periplasmic solute binding protein 249 3e-64 Q8E6I3.1 Q8E6I3_STRA3 Putative uncharacterized protein gbs0580 217 2e-54 Q8E128.1 Q8E128_STRA5 Zinc ABC transporter, zinc-binding adhesio... 217 2e-54 Q3DLP7.1 Q3DLP7_STRAG Zinc ABC transporter, zinc-binding adhesio... 217 2e-54 Q3K2D7.1 Q3K2D7_STRA1 Zinc ABC transporter, zinc-binding protein... 215 5e-54 >B3KEM2.1 B3KEM2_9BACI Periplasmic solute binding protein Length = 407 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 116/169 (68%), Positives = 141/169 (83%) Query: 200 VWLAPSLAIKEVRTIEXXXXXXXXXXXXXFQTNSDAYIAKLEQLDQDFKAGLKDTKRKDF 259 VWL+P++A+K+VR IE F+ N+DAY++KLE LD++F+ GLK+TKRKDF Sbjct: 239 VWLSPAMAVKQVRNIEAGLAEAAPEHQEAFKANADAYVSKLEALDKEFRDGLKNTKRKDF 298 Query: 260 ITQHAAFGYLAKEYGLTQVPIAGLSPEQEPSAAQMAKIVEFAKAHKVKTIFFETLVSSSV 319 ITQHAAFGYLA+EYGLTQVPIAGLSP+QEPSAAQMA+++EFAK H VKTIFFE LVSS+V Sbjct: 299 ITQHAAFGYLAREYGLTQVPIAGLSPDQEPSAAQMAEVIEFAKEHNVKTIFFEMLVSSNV 358 Query: 320 ADTIAGEIGAKSAVLNPIEGLTEADRSSNLDYLGIMRQNLEALKTALNE 368 A+TIA EIGA ++VLNPIEGLTE D + NLDY+ IMRQNL+AL ALNE Sbjct: 359 AETIASEIGASTSVLNPIEGLTEEDIADNLDYIAIMRQNLDALTKALNE 407 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 68/96 (70%), Positives = 78/96 (81%) Query: 52 VKTDKLDIKVSFYPMYEFTKNIVGDLADVETLIPAGIEPHDWEPTAQDMAEISAADVLVY 111 +T KL +K SFYPMYEFTK + GDLADVE LIP GIE HDWEPT QDMA IS ADVLVY Sbjct: 48 TETTKLKVKTSFYPMYEFTKQVAGDLADVENLIPPGIEAHDWEPTPQDMAGISDADVLVY 107 Query: 112 NGAGMEGWAQQVIDSAKGTQLVAVEASKGLDIMEGV 147 NGAGMEGW QV++S +GT + A+EASKG++IMEG Sbjct: 108 NGAGMEGWVDQVLESIQGTGVSAIEASKGIEIMEGT 143 >Q8E6I3.1 Q8E6I3_STRA3 Putative uncharacterized protein gbs0580 Length = 506 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 175/308 (56%), Gaps = 30/308 (9%) Query: 56 KLDIKVSFYPMYEFTKNIVGDLADVETLIPAGIEPHDWEPTAQDMAEISAADVLVYNGAG 115 KL + +FYP+YEFTKN+VGD ADV LI AG EPHD+EP+ +++A I ++ VY Sbjct: 31 KLKVVTTFYPVYEFTKNVVGDKADVSMLIKAGTEPHDFEPSTKNIAAIQDSNAFVYMDDN 90 Query: 116 MEGWAQQVIDSAKGTQLVAVEASKGLDIMEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 175 ME WA +V S K ++ ++ + + + +GV Sbjct: 91 METWAPKVAKSVKSKKVTTIKGTGDMLLTKGVEE-------------------------- 124 Query: 176 XXXGTAEEXXXXXXXXXXXXXXXXVWLAPSLAIKEVRTIEXXXXXXXXXXXXXFQTNSDA 235 EE VWL+P AI V I F N+DA Sbjct: 125 ----EGEEHEGHGHEGHHHELDPHVWLSPERAISVVENIRNKFVKAYPKDAASFNKNADA 180 Query: 236 YIAKLEQLDQDFKAGLKDTKRKDFITQHAAFGYLAKEYGLTQVPIAGLSPEQEPSAAQMA 295 YIAKL++LD+++K GL + K+K F+TQHAAFGY+A +YGL QVPIAGL+P+ EPS+ ++ Sbjct: 181 YIAKLKELDKEYKNGLSNAKQKSFVTQHAAFGYMALDYGLNQVPIAGLTPDAEPSSKRLG 240 Query: 296 KIVEFAKAHKVKTIFFETLVSSSVADTIAGEIGAKSAVLNPIEGLTEADRSSNLDYLGIM 355 ++ ++ K + + I+FE S+ VA T+A E+G K+AVL+P+EGL++ + ++ DY +M Sbjct: 241 ELAKYIKKYNINYIYFEENASNKVAKTLADEVGVKTAVLSPLEGLSKKEMAAGEDYFSVM 300 Query: 356 RQNLEALK 363 R+NL+ LK Sbjct: 301 RRNLKVLK 308 >Q8E128.1 Q8E128_STRA5 Zinc ABC transporter, zinc-binding adhesion liprotein Length = 506 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 175/308 (56%), Gaps = 30/308 (9%) Query: 56 KLDIKVSFYPMYEFTKNIVGDLADVETLIPAGIEPHDWEPTAQDMAEISAADVLVYNGAG 115 KL + +FYP+YEFTKN+VGD ADV LI AG EPHD+EP+ +++A I ++ VY Sbjct: 31 KLKVVTTFYPVYEFTKNVVGDKADVSMLIKAGTEPHDFEPSTKNIAAIQDSNAFVYMDDN 90 Query: 116 MEGWAQQVIDSAKGTQLVAVEASKGLDIMEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 175 ME WA +V S K ++ ++ + + + +GV Sbjct: 91 METWAPKVAKSVKSKKVTTIKGTGDMLLTKGVEE-------------------------- 124 Query: 176 XXXGTAEEXXXXXXXXXXXXXXXXVWLAPSLAIKEVRTIEXXXXXXXXXXXXXFQTNSDA 235 EE VWL+P AI V I F N+DA Sbjct: 125 ----EGEEHEGHGHEGHHHELDPHVWLSPERAISVVENIRNKFVKAYPKDAASFNKNADA 180 Query: 236 YIAKLEQLDQDFKAGLKDTKRKDFITQHAAFGYLAKEYGLTQVPIAGLSPEQEPSAAQMA 295 YIAKL++LD+++K GL + K+K F+TQHAAFGY+A +YGL QVPIAGL+P+ EPS+ ++ Sbjct: 181 YIAKLKELDKEYKNGLSNAKQKSFVTQHAAFGYMALDYGLNQVPIAGLTPDAEPSSKRLG 240 Query: 296 KIVEFAKAHKVKTIFFETLVSSSVADTIAGEIGAKSAVLNPIEGLTEADRSSNLDYLGIM 355 ++ ++ K + + I+FE S+ VA T+A E+G K+AVL+P+EGL++ + ++ DY +M Sbjct: 241 ELAKYIKKYNINYIYFEENASNKVAKTLADEVGVKTAVLSPLEGLSKKEMAAGEDYFSVM 300 Query: 356 RQNLEALK 363 R+NL+ LK Sbjct: 301 RRNLKVLK 308 >Q3DLP7.1 Q3DLP7_STRAG Zinc ABC transporter, zinc-binding adhesion liprotein Length = 508 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 174/308 (56%), Gaps = 28/308 (9%) Query: 56 KLDIKVSFYPMYEFTKNIVGDLADVETLIPAGIEPHDWEPTAQDMAEISAADVLVYNGAG 115 KL + +FYP+YEFTKN+VGD ADV LI AG EPHD+EP+ +++A I ++ VY Sbjct: 31 KLKVVTTFYPVYEFTKNVVGDKADVSMLIKAGTEPHDFEPSTKNIAAIQDSNAFVYMDDN 90 Query: 116 MEGWAQQVIDSAKGTQLVAVEASKGLDIMEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 175 ME WA +V S K ++ ++ + + + +GV Sbjct: 91 METWAPKVAKSVKSKKVTTIKGTGDMLLTKGVEEEG------------------------ 126 Query: 176 XXXGTAEEXXXXXXXXXXXXXXXXVWLAPSLAIKEVRTIEXXXXXXXXXXXXXFQTNSDA 235 E VWL+P AI V I F N+DA Sbjct: 127 ----EDHEHEGHGHEGHHHELDPHVWLSPERAISVVENIRNKFVKAYPKDAASFNKNADA 182 Query: 236 YIAKLEQLDQDFKAGLKDTKRKDFITQHAAFGYLAKEYGLTQVPIAGLSPEQEPSAAQMA 295 YIAKL++LD+++K GL + K+K F+TQHAAFGY+A +YGL QVPIAGL+P+ EPS+ ++ Sbjct: 183 YIAKLKELDKEYKNGLSNAKQKSFVTQHAAFGYMALDYGLNQVPIAGLTPDAEPSSKRLG 242 Query: 296 KIVEFAKAHKVKTIFFETLVSSSVADTIAGEIGAKSAVLNPIEGLTEADRSSNLDYLGIM 355 ++ ++ K + + I+FE S+ VA T+A E+G K+AVL+P+EGL++ + ++ DY +M Sbjct: 243 ELAKYIKKYNINYIYFEENASNKVAKTLADEVGVKTAVLSPLEGLSKKEMAAGEDYFSVM 302 Query: 356 RQNLEALK 363 R+NL+ LK Sbjct: 303 RRNLKVLK 310 >Q3K2D7.1 Q3K2D7_STRA1 Zinc ABC transporter, zinc-binding protein AdcA Length = 506 Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 174/308 (56%), Gaps = 30/308 (9%) Query: 56 KLDIKVSFYPMYEFTKNIVGDLADVETLIPAGIEPHDWEPTAQDMAEISAADVLVYNGAG 115 KL + +FYP+YEFTKN+VGD ADV LI AG EPHD+EP+ +++A I ++ VY Sbjct: 31 KLKVVTTFYPVYEFTKNVVGDKADVSMLIKAGTEPHDFEPSTKNIAAIQDSNAFVYMDDN 90 Query: 116 MEGWAQQVIDSAKGTQLVAVEASKGLDIMEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 175 ME W +V S K ++ ++ + + + +GV Sbjct: 91 METWVPKVAKSVKSKKVTTIKGTGDMLLTKGVEE-------------------------- 124 Query: 176 XXXGTAEEXXXXXXXXXXXXXXXXVWLAPSLAIKEVRTIEXXXXXXXXXXXXXFQTNSDA 235 EE VWL+P AI V I F N+DA Sbjct: 125 ----EGEEHEGHGHEGHHHELDPHVWLSPERAISVVENIRNKFVKAYPKDAASFNKNADA 180 Query: 236 YIAKLEQLDQDFKAGLKDTKRKDFITQHAAFGYLAKEYGLTQVPIAGLSPEQEPSAAQMA 295 YIAKL++LD+++K GL + K+K F+TQHAAFGY+A +YGL QVPIAGL+P+ EPS+ ++ Sbjct: 181 YIAKLKELDKEYKNGLSNAKQKSFVTQHAAFGYMALDYGLNQVPIAGLTPDAEPSSKRLG 240 Query: 296 KIVEFAKAHKVKTIFFETLVSSSVADTIAGEIGAKSAVLNPIEGLTEADRSSNLDYLGIM 355 ++ ++ K + + I+FE S+ VA T+A E+G K+AVL+P+EGL++ + ++ DY +M Sbjct: 241 ELAKYIKKYNINYIYFEENASNKVAKTLADEVGVKTAVLSPLEGLSKKEMAAGEDYFSVM 300 Query: 356 RQNLEALK 363 R+NL+ LK Sbjct: 301 RRNLKVLK 308 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,424,810,351 Number of extensions: 47599745 Number of successful extensions: 100983 Number of sequences better than 1.0e-05: 1301 Number of HSP's gapped: 100495 Number of HSP's successfully gapped: 1907 Length of query: 368 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 231 Effective length of database: 1,770,017,148 Effective search space: 408873961188 Effective search space used: 408873961188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)