BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0019.p
         (62 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEM3.1 B3KEM3_9BACI Ribosomal protein S14                            69   1e-10
A7Z2Q4.1 RS14_BACA2 30S ribosomal protein S14                          68   3e-10
Q5WAR0.1 RS14_BACSK 30S ribosomal protein S14                          67   4e-10
B9DP79.1 B9DP79_STACT Putative 30S ribosomal protein S14               65   1e-09
A8VV96.1 A8VV96_9BACI Ribosomal protein S14-like protein               65   2e-09

>B3KEM3.1 B3KEM3_9BACI Ribosomal protein S14
          Length = 89

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 39/43 (90%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSK+VKE KRQE+VA++A KR+ELK KGDY ALQKLPRDS
Sbjct: 1  MAKKSKVVKERKRQEMVAKYAQKRKELKEKGDYAALQKLPRDS 43


>A7Z2Q4.1 RS14_BACA2 30S ribosomal protein S14
          Length = 89

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSK++KELKRQ+LV ++AD RRELKAKGD+ AL KLPRDS
Sbjct: 1  MAKKSKVIKELKRQKLVEQYADIRRELKAKGDWEALSKLPRDS 43


>Q5WAR0.1 RS14_BACSK 30S ribosomal protein S14
          Length = 89

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 40/43 (93%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKK+K+ KELKRQELVA++A+KR+ELK KGDY+AL KLPRDS
Sbjct: 1  MAKKAKVQKELKRQELVAQYAEKRKELKEKGDYVALAKLPRDS 43


>B9DP79.1 B9DP79_STACT Putative 30S ribosomal protein S14
          Length = 89

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 38/43 (88%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSK+VKE KR+ELVA++  KR+ELKAKGDY  LQKLPRDS
Sbjct: 1  MAKKSKVVKEQKREELVAKYYAKRQELKAKGDYEGLQKLPRDS 43


>A8VV96.1 A8VV96_9BACI Ribosomal protein S14-like protein
          Length = 89

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 38/43 (88%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSK+ KE KR+ELVA +A+KR+ELK KGDY+AL KLPRDS
Sbjct: 1  MAKKSKVAKERKREELVARYAEKRKELKEKGDYIALSKLPRDS 43


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 296,483,715
Number of extensions: 7877377
Number of successful extensions: 22345
Number of sequences better than 1.0e-05: 95
Number of HSP's gapped: 22371
Number of HSP's successfully gapped: 95
Length of query: 62
Length of database: 3,060,696,203
Length adjustment: 34
Effective length of query: 28
Effective length of database: 2,740,381,693
Effective search space: 76730687404
Effective search space used: 76730687404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)