BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0016.p (213 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2XW24.1 C2XW24_BACCE Putative uncharacterized protein 133 9e-30 B9E069.1 B9E069_CLOK1 Putative uncharacterized protein 130 9e-29 A5N6Q0.1 A5N6Q0_CLOK5 Predicted methyltransferase 130 9e-29 C3A804.1 C3A804_BACMY Putative uncharacterized protein 125 3e-27 A5FF93.1 A5FF93_FLAJ1 Methyltransferase type 11 125 4e-27 >C2XW24.1 C2XW24_BACCE Putative uncharacterized protein Length = 209 Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 2/182 (1%) Query: 1 MSQYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVFSSD-LET 59 M+++W F M+WG +PS SA+ K FLE+ VK +L+PG GYGRN KVF + + Sbjct: 1 MTEFWEASFIENQMMWGFEPSDSAILTKDIFLEKKVKDILIPGIGYGRNAKVFIDNGIHV 60 Query: 60 YGVELSGEALELAAGRDSQTRFIEGSALEPQLD-ILVDAVYCYDVLHLFLAGERRQLIAA 118 G+E+S A+ELA + F GS + D L D ++CY ++HL ER + I Sbjct: 61 TGIEISKTAIELARANELNADFFHGSVTDMPFDNKLYDGIFCYALIHLLNKDEREKFIKD 120 Query: 119 CLAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSAAEVV 178 C +QL+P G + FT+ S + G G+ L +E EG +F+ +++ F ++ Sbjct: 121 CYSQLKPNGYMIFTTISKDAPMFGKGKQLGKDYFEIMEGVKMYFYDMDSVKQDFGKYGLI 180 Query: 179 ET 180 ET Sbjct: 181 ET 182 >B9E069.1 B9E069_CLOK1 Putative uncharacterized protein Length = 209 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 5/211 (2%) Query: 1 MSQYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVF-SSDLET 59 M+++W + F M+WG +PS SA+ K +FLE+ +K +L+PG GYGRN KVF +++ Sbjct: 1 MTEFWESSFIENQMMWGFEPSDSAILTKDFFLEKNIKDILIPGIGYGRNAKVFIDNEINV 60 Query: 60 YGVELSGEALELAAGRDSQTRFIEGSALEPQLD-ILVDAVYCYDVLHLFLAGERRQLIAA 118 G+E+S A++LA GS + D L D ++CY ++HL ER + I Sbjct: 61 TGIEISKTAVDLARQNGLNISIFHGSVTDMPFDNKLYDGIFCYALIHLLNNHERDKFIKD 120 Query: 119 CLAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSAAEVV 178 C QL+P G + FT+ S E G G+ L +E EG F++ +++ F ++ Sbjct: 121 CYNQLKPNGYMIFTTISKEAPMFGKGKQLGKDYFEIMEGIKMFFYNSDSIKQEFGKYGLI 180 Query: 179 ETGTFQESLQSPGGGTHEYLLREIFARKRRE 209 E F E ++ ++ + I R ++E Sbjct: 181 E---FSEIVEPHKNVENKPPFKFIMVRCQKE 208 >A5N6Q0.1 A5N6Q0_CLOK5 Predicted methyltransferase Length = 209 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 5/211 (2%) Query: 1 MSQYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVF-SSDLET 59 M+++W + F M+WG +PS SA+ K +FLE+ +K +L+PG GYGRN KVF +++ Sbjct: 1 MTEFWESSFIENQMMWGFEPSDSAILTKDFFLEKNIKDILIPGIGYGRNAKVFIDNEINV 60 Query: 60 YGVELSGEALELAAGRDSQTRFIEGSALEPQLD-ILVDAVYCYDVLHLFLAGERRQLIAA 118 G+E+S A++LA GS + D L D ++CY ++HL ER + I Sbjct: 61 TGIEISKTAVDLARQNGLNISIFHGSVTDMPFDNKLYDGIFCYALIHLLNNHERDKFIKD 120 Query: 119 CLAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSAAEVV 178 C QL+P G + FT+ S E G G+ L +E EG F++ +++ F ++ Sbjct: 121 CYNQLKPNGYMIFTTISKEAPMFGKGKQLGKDYFEIMEGIKMFFYNSDSIKQEFGKYGLI 180 Query: 179 ETGTFQESLQSPGGGTHEYLLREIFARKRRE 209 E F E ++ ++ + I R ++E Sbjct: 181 E---FSEIVEPHKNVENKPPFKFIMVRCQKE 208 >C3A804.1 C3A804_BACMY Putative uncharacterized protein Length = 209 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 2/182 (1%) Query: 1 MSQYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVF-SSDLET 59 M+++W F M+WG + + SA+ K +FLE+ VK +L+PG GYGRN KVF ++++ Sbjct: 1 MTEFWEASFIENQMMWGFEAADSAILTKDFFLEKKVKDILIPGIGYGRNAKVFIDTEIQV 60 Query: 60 YGVELSGEALELAAGRDSQTRFIEGSALEPQLD-ILVDAVYCYDVLHLFLAGERRQLIAA 118 G+E+S A+ELA + GS + D L D ++ Y ++HL ER + I Sbjct: 61 TGIEISKTAIELARENEINANLFHGSVTDMPFDNKLYDGIFSYALIHLLNKDEREKFIKD 120 Query: 119 CLAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSAAEVV 178 C +QL+P G + FT+ S + G G+ L +E EG +F+ +++ F ++ Sbjct: 121 CYSQLKPNGYMIFTTISKDAPMFGKGKQLGKDYFEIMEGVKMYFYDVDSVKQDFGNYGLI 180 Query: 179 ET 180 ET Sbjct: 181 ET 182 >A5FF93.1 A5FF93_FLAJ1 Methyltransferase type 11 Length = 292 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 99/177 (55%), Gaps = 3/177 (1%) Query: 1 MSQYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVFSSD-LET 59 M + W T F +WG +P+ SA+ A F +K++L+PG GYGRN ++F ++ + Sbjct: 83 MQEQWDTCFQSNNTVWGLEPAKSAILANELFSTSSLKNILIPGFGYGRNAQLFMNNGMNV 142 Query: 60 YGVELSGEALELA-AGRDSQTRFIEGSALE-PQLDILVDAVYCYDVLHLFLAGERRQLIA 117 G+E+S A+ +A + + I GS E P DI+ D ++C+ +L+L +R ++ Sbjct: 143 TGIEISETAIRIAEQNYNGKVEIIHGSVTEMPFNDIIYDGIFCHGLLYLLNTAQRTDMLN 202 Query: 118 ACLAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSA 174 AC QL+PGG +YF+ S SN G GR + P T+E +G F+ +++ F A Sbjct: 203 ACYNQLKPGGYMYFSVLSKTSSNYGLGREIAPDTFENAQGVQIFFYDSDSIQKEFGA 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,362,617,885 Number of extensions: 57666306 Number of successful extensions: 125232 Number of sequences better than 1.0e-05: 98 Number of HSP's gapped: 125181 Number of HSP's successfully gapped: 98 Length of query: 213 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 83 Effective length of database: 1,835,964,253 Effective search space: 152385032999 Effective search space used: 152385032999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)