BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0013.p
         (194 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJY8.1 B3KJY8_9BACI Helix-turn-helix domain protein                 157   4e-37
B3KJY7.1 B3KJY7_9BACI Putative uncharacterized protein                 92   2e-17

>B3KJY8.1 B3KJY8_9BACI Helix-turn-helix domain protein
          Length = 109

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 84/99 (84%), Gaps = 1/99 (1%)

Query: 1  MPNN-QQEPHKIQAWSLINRKYLGQGVRVKRFRRPKRSQIRNRVLLAVLMAKDIKLSRLA 59
          MP   QQE H I+AWSLINRKYLG+GVRVKRFRRP R QIRNRVLLAVLMA DIKLS+LA
Sbjct: 1  MPTQLQQEKHSIEAWSLINRKYLGKGVRVKRFRRPTRCQIRNRVLLAVLMANDIKLSQLA 60

Query: 60 EELSVSSRSVSAWVYEGRIPSRTNLDKVCRTLGYPSHIL 98
          EEL VSSRSVSAWVYEGR+P + NL+K C  LGYP HIL
Sbjct: 61 EELGVSSRSVSAWVYEGRVPGKNNLEKACDYLGYPRHIL 99


>B3KJY7.1 B3KJY7_9BACI Putative uncharacterized protein
          Length = 61

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 46/56 (82%)

Query: 138 MVYDFSVTDVSIWIGVHPGTFRKWLHQCHLPTLALQEKAENFFHIPRHILFADCEL 193
           MV+D SV+DVS WIGVHPGTFRKWLHQ  +P+ A QEKAE FF IP+ +LFADC L
Sbjct: 1   MVHDLSVSDVSRWIGVHPGTFRKWLHQGTVPSAAFQEKAEQFFRIPKSVLFADCAL 56


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,135,300,564
Number of extensions: 41269041
Number of successful extensions: 106499
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 106499
Number of HSP's successfully gapped: 2
Length of query: 194
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 66
Effective length of database: 1,854,806,283
Effective search space: 122417214678
Effective search space used: 122417214678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)