BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0012.p
         (95 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJZ0.1 B3KJZ0_9BACI Stress responsive alpha-beta barrel domain...   123   5e-27
B1D7H8.1 B1D7H8_9BACL Stress responsive alpha-beta barrel domain...   118   1e-25
A4J475.1 A4J475_DESRM Stress responsive alpha-beta barrel domain...   103   7e-21
Q39YC4.1 Q39YC4_GEOMG Putative uncharacterized protein                102   1e-20
Q748N1.1 Q748N1_GEOSL Putative uncharacterized protein                 96   1e-18

>B3KJZ0.1 B3KJZ0_9BACI Stress responsive alpha-beta barrel domain protein
          Length = 95

 Score =  123 bits (309), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 78/95 (82%)

Query: 1  MIKHIVFFKLKDRAPEKVQETVAVLRNMEGKIPQLLSIEVGADIIRSERSFDIALVTVVA 60
          MIKHIVFFKLKD   E +++TV VLR+M+GKIP L S+E GAD+IRSERS+D+AL+  V 
Sbjct: 1  MIKHIVFFKLKDPTAENIEKTVQVLRDMDGKIPMLRSLEAGADVIRSERSYDLALIVEVD 60

Query: 61 SLDDLQAYQVHPEHKKVIAHINEVKEVSYAVDYEI 95
          +L+DLQAY VHP H++VI +IN VK+ + +VD+E+
Sbjct: 61 NLEDLQAYAVHPVHQEVIQYINTVKDHTLSVDFEV 95


>B1D7H8.1 B1D7H8_9BACL Stress responsive alpha-beta barrel domain protein
          Length = 95

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 72/93 (77%)

Query: 1  MIKHIVFFKLKDRAPEKVQETVAVLRNMEGKIPQLLSIEVGADIIRSERSFDIALVTVVA 60
          MI HIV FKLKD + E V+ T  VLR+MEGKI +L SIEVG D+I S RS+DIAL+T   
Sbjct: 1  MITHIVLFKLKDGSSENVERTAQVLRDMEGKIDELKSIEVGLDVIHSARSYDIALITRFE 60

Query: 61 SLDDLQAYQVHPEHKKVIAHINEVKEVSYAVDY 93
          S++ L+AYQVHP H+KVI HINEV+E + AVD+
Sbjct: 61 SMEALEAYQVHPVHQKVIEHINEVREAAVAVDF 93


>A4J475.1 A4J475_DESRM Stress responsive alpha-beta barrel domain protein
          Length = 93

 Score =  103 bits (256), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 66/94 (70%), Gaps = 2/94 (2%)

Query: 1  MIKHIVFFKLKDRAPEKVQETVAVLRNMEGKIPQLLSIEVGADIIRSERSFDIALVTVVA 60
          MI HIVFFK KD   + +      L  +EGK+PQL  +EVG D+IRSERSFD+ALV    
Sbjct: 1  MITHIVFFKFKDS--DSIPIVKEKLMALEGKVPQLRHLEVGVDVIRSERSFDLALVAKFE 58

Query: 61 SLDDLQAYQVHPEHKKVIAHINEVKEVSYAVDYE 94
          ++DDL AYQVHPEH++V+ +I  VKE   AVDYE
Sbjct: 59 NMDDLNAYQVHPEHQEVVKYIGTVKESIVAVDYE 92


>Q39YC4.1 Q39YC4_GEOMG Putative uncharacterized protein
          Length = 123

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 64/95 (67%), Gaps = 1/95 (1%)

Query: 1   MIKHIVFFKLKDRAPEKVQETVAVLRNMEGKIPQLLSIEVGADIIRSERSFDIALVTVVA 60
           M+ HIVFFKL D  P  V  T   L +M G+IP L  +EVG D+IRSERS+D+ALVT   
Sbjct: 27  MVTHIVFFKLHDPTPANVTATREKLESMRGEIPLLRHLEVGVDVIRSERSYDLALVTKFD 86

Query: 61  SLDDLQAYQVHPEH-KKVIAHINEVKEVSYAVDYE 94
           S++DLQAYQVHP H  +VI H+  V     AVDYE
Sbjct: 87  SMEDLQAYQVHPYHAGEVIPHMKAVSSSVVAVDYE 121


>Q748N1.1 Q748N1_GEOSL Putative uncharacterized protein
          Length = 96

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 1/95 (1%)

Query: 1  MIKHIVFFKLKDRAPEKVQETVAVLRNMEGKIPQLLSIEVGADIIRSERSFDIALVTVVA 60
          MI HIVFFKL D +   +  T   L +M GK+P L  IEVG D+IRSERS+D+ALVT   
Sbjct: 1  MITHIVFFKLTDPSAPTIAATREKLESMRGKVPLLRHIEVGVDVIRSERSYDLALVTRFD 60

Query: 61 SLDDLQAYQVHPEH-KKVIAHINEVKEVSYAVDYE 94
          SL DLQAYQV P H  +V+ H+  V     AVDYE
Sbjct: 61 SLADLQAYQVDPYHAGEVVPHMKSVCSSIVAVDYE 95


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.136    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 494,596,895
Number of extensions: 15574554
Number of successful extensions: 47868
Number of sequences better than 1.0e-05: 134
Number of HSP's gapped: 47801
Number of HSP's successfully gapped: 134
Length of query: 95
Length of database: 3,060,696,203
Length adjustment: 64
Effective length of query: 31
Effective length of database: 2,457,751,243
Effective search space: 76190288533
Effective search space used: 76190288533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)