BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0010.p (170 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJZ1.1 B3KJZ1_9BACI Putative uncharacterized protein 190 5e-47 B1D7H6.1 B1D7H6_9BACL Putative uncharacterized protein 163 4e-39 Q9K7D4.1 Q9K7D4_BACHD BH3430 protein 97 7e-19 C2Y152.1 C2Y152_BACCE Putative uncharacterized protein 95 2e-18 C2PM85.1 C2PM85_BACCE Putative uncharacterized protein 95 2e-18 >B3KJZ1.1 B3KJZ1_9BACI Putative uncharacterized protein Length = 140 Score = 190 bits (482), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 96/140 (68%), Positives = 109/140 (77%), Gaps = 1/140 (0%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +YYVN++QIE L IPDI +GLRAAA SWDGG GLVQER LHLAIEVVTDVGS LID Sbjct: 1 MYYVNQEQIERRLNAIPDIAEGLRAAAQSWDGGLVLGLVQERALHLAIEVVTDVGSYLID 60 Query: 85 GFIMRDAGSYEDIISIIHEEKVFEGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPLTAK 144 GFIMRDA SYEDI+ I HEEKVF ++ +L++LV LRKPLVQDYY WDR +LH LT Sbjct: 61 GFIMRDASSYEDIMDINHEEKVF-PQEVHKVLMELVRLRKPLVQDYYDWDRQALHSLTPV 119 Query: 145 LPEALEQFAAAVQSYLDQEL 164 LP+ LEQFA V+ YL EL Sbjct: 120 LPDVLEQFAGNVREYLKNEL 139 >B1D7H6.1 B1D7H6_9BACL Putative uncharacterized protein Length = 148 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/140 (59%), Positives = 97/140 (69%), Gaps = 1/140 (0%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +YYVN++QI + L IPDI L A AASW G GL QER LHLAIE VTDVGS LID Sbjct: 1 MYYVNKEQIAVRLKAIPDIATALEALAASWQGTLLEGLAQERALHLAIETVTDVGSYLID 60 Query: 85 GFIMRDAGSYEDIISIIHEEKVFEGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPLTAK 144 GFI+RDA SYEDI+ I E F ++ LLI+LV LRKPLVQDYY+W R LH LT Sbjct: 61 GFILRDASSYEDIVEITGEAGAF-PEAMQPLLIELVKLRKPLVQDYYSWPRAELHALTRD 119 Query: 145 LPEALEQFAAAVQSYLDQEL 164 +PE L F +VQ YL++EL Sbjct: 120 IPEQLRLFGESVQQYLEREL 139 >Q9K7D4.1 Q9K7D4_BACHD BH3430 protein Length = 151 Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/144 (42%), Positives = 83/144 (57%), Gaps = 9/144 (6%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +Y+V+RK IE L + I + + W T L ER HL IE V DVG+S+ID Sbjct: 1 MYFVDRKTIEETLRHMEKIVDHF-CSQSEWTSET-ERLALERIAHLVIESVIDVGNSMID 58 Query: 85 GFIMRDAGSYEDIISIIHEEKVF---EGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPL 141 GFIMRD GSYEDI+ I+ +E V +G SL L+A RK +VQ Y A D L Sbjct: 59 GFIMRDPGSYEDIVDILIDENVVDEADGQSLKA----LIACRKLVVQAYTAIDHQQLKQT 114 Query: 142 TAKLPEALEQFAAAVQSYLDQELG 165 + EA+++F V++YL++ELG Sbjct: 115 FDQHVEAVKRFPERVRTYLEKELG 138 >C2Y152.1 C2Y152_BACCE Putative uncharacterized protein Length = 146 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +Y+V+RK+IE +L + + F L ER HL I+ + DVG+++ID Sbjct: 1 MYFVDRKKIEQMLVCLEQATNTFQEKKTYETEFEFYAL--ERMAHLIIDCILDVGNAMID 58 Query: 85 GFIMRDAGSYEDIISIIHEEKVFEGSSLYGLLI-QLVALRKPLVQDYYAWDRTSLHPLTA 143 GFIMRD GSYEDII I+ +E+V G G I +++ LRK L QDY + L+ Sbjct: 59 GFIMRDPGSYEDIIDILMDERVISGEE--GAHIKEIILLRKMLTQDYIQMNHDELYKTIQ 116 Query: 144 KLPEALEQFAAAVQSYLDQELG 165 K +E++ A ++SYL++ELG Sbjct: 117 KNIAVVEKYPANIRSYLEKELG 138 >C2PM85.1 C2PM85_BACCE Putative uncharacterized protein Length = 146 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 3/141 (2%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +Y+V+RK+IE +L + + F L ER HL I+ V DVG+++ID Sbjct: 1 MYFVDRKKIEQMLVCLERATSTFQEKKIYETEFEFYAL--ERIAHLIIDCVLDVGNAMID 58 Query: 85 GFIMRDAGSYEDIISIIHEEKVFEGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPLTAK 144 GFIMRD GSYEDII I+ +E+V G+ +++ LRK L QDY + L+ K Sbjct: 59 GFIMRDPGSYEDIIDILMDERVISAEEGQGMK-EIILLRKMLTQDYIQMNHDELYKTIQK 117 Query: 145 LPEALEQFAAAVQSYLDQELG 165 +E++ A ++SYL++ELG Sbjct: 118 HIAVVEKYPANIRSYLEKELG 138 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,026,249,357 Number of extensions: 40930614 Number of successful extensions: 88078 Number of sequences better than 1.0e-05: 126 Number of HSP's gapped: 87963 Number of HSP's successfully gapped: 126 Length of query: 170 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 44 Effective length of database: 1,873,648,313 Effective search space: 82440525772 Effective search space used: 82440525772 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)