BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0009.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJK8.1 B3KJK8_9BACI Regulatory protein ArsR 211 3e-53 A5UY96.1 A5UY96_ROSS1 Transcriptional regulator 198 3e-49 C0ZKU4.1 C0ZKU4_BREBN Putative transcriptional regulator 195 2e-48 B1D7H5.1 B1D7H5_9BACL Putative transcriptional regulator 195 3e-48 A7NQC0.1 A7NQC0_ROSCS Putative transcriptional regulator 194 7e-48 >B3KJK8.1 B3KJK8_9BACI Regulatory protein ArsR Length = 215 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 98/199 (49%), Positives = 136/199 (68%) Query: 9 STRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGRPLHV 68 STR IM +LK+ G L+ ++ E LGIT M VRRH+ L+ E + V+Q MGRP+ + Sbjct: 8 STREYIMQMLKINGELSTKSITEALGITGMAVRRHLESLKNEGYITYRTVKQPMGRPVSL 67 Query: 69 YSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPMMEKRNLE 128 YSLTE AED FPK+YH+LAL+LL EL +G E +++LF+ R+ +L +Y P ++ LE Sbjct: 68 YSLTESAEDFFPKNYHSLALDLLNELQDEAGDEMISLLFDKRKDTLLNKYTPTVKAETLE 127 Query: 129 ERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEELLGA 188 +RVA L+ IQN GYM ++ + D YV++E NCPI QVA +Y+ AC+CE LF+ LL A Sbjct: 128 DRVAALAQIQNDNGYMVDYQKVTDEEYVLEELNCPISQVANRYQHACRCELDLFQSLLEA 187 Query: 189 KVTRTECMAEGGQSCRYAI 207 V RTEC+A+G + C Y I Sbjct: 188 DVERTECLAKGDKKCVYRI 206 >A5UY96.1 A5UY96_ROSS1 Transcriptional regulator Length = 211 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/204 (48%), Positives = 141/204 (69%) Query: 5 QESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGR 64 +E G TR+ I+ LL+ KGP+T G L++ELGI +GVR+H+ LE++ L +T VR+++GR Sbjct: 6 REQGETRQQILLLLRRKGPMTAGELSDELGIGSVGVRQHLALLERDGLVQTSGVRRSVGR 65 Query: 65 PLHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPMMEK 124 P H+Y+LT AE FPK+Y +L ++ L + G+EA+N LFE RRKR+ A+YAP +E Sbjct: 66 PSHLYALTAAAEALFPKAYDHLLIDALEFVKAQGGEEAINRLFEARRKRLHAEYAPRLEG 125 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEE 184 R+L ERVAEL+SI N GYM EW + DG+ + E+NCPI VA Y +AC E+AL+E+ Sbjct: 126 RSLPERVAELASILNEHGYMCEWRRLPDGAIELVEHNCPIDCVARDYPQACVHERALYED 185 Query: 185 LLGAKVTRTECMAEGGQSCRYAIT 208 LL V R + +A G+ CR+ I Sbjct: 186 LLRVPVERQQTIAADGRCCRFRIA 209 >C0ZKU4.1 C0ZKU4_BREBN Putative transcriptional regulator Length = 209 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/208 (45%), Positives = 138/208 (66%), Gaps = 2/208 (0%) Query: 5 QESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGR 64 E STR I+ +LK+KG L + +A ELGITEM VRRH+ LE++ L K+ +VRQAMGR Sbjct: 3 NEGTSTRDQILHMLKVKGSLPVSDMAVELGITEMAVRRHLNTLERDNLIKSTLVRQAMGR 62 Query: 65 PLHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPMMEK 124 P +VYSL++ A++ FP++Y +L L+ L+++ G + +LF R R+ Y M+ Sbjct: 63 PTNVYSLSQEADELFPRNYSHLTLDFLQDIKEIDGLSKIEMLFRRRENRLEETYRSYMQG 122 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGS-YVMQEYNCPIRQVATQYRKACQCEQALFE 183 +LE RVA+L+ +QN GYM EW ++E+G Y +QE+NCPI QVA ++ +AC CE +LF Sbjct: 123 -DLENRVAKLAELQNDKGYMVEWEKDENGDGYRIQEFNCPISQVAREFNQACSCELSLFR 181 Query: 184 ELLGAKVTRTECMAEGGQSCRYAITPRK 211 +L A V +T CMA+GG C + I K Sbjct: 182 RVLNANVEQTTCMAKGGDKCVFHIKEAK 209 >B1D7H5.1 B1D7H5_9BACL Putative transcriptional regulator Length = 226 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 134/202 (66%), Gaps = 3/202 (1%) Query: 8 GSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGRPLH 67 G+TR I+ LLK G L+ G L+ ELGITEM VRRH+ LE+E V+Q MGRP+H Sbjct: 17 GTTRGRILFLLKTNGRLSAGQLSGELGITEMAVRRHMYALEREGSIGIVSVKQGMGRPVH 76 Query: 68 VYSLTERAEDHFPKSYHNLALELLRELDHGSGQEA--VNVLFEGRRKRMLAQYAPMMEKR 125 Y LT A+D FPK+Y NL L E + A + +FEGR++++L +Y P M + Sbjct: 77 AYELTRLADDRFPKNY-NLLALDLLEELAEDPETAGLITRMFEGRQQKLLDRYEPRMTGK 135 Query: 126 NLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEEL 185 +L E+V EL +IQNAGGYMA+ +++G YV+ EYNCPI QVA +Y +AC CE +LFE L Sbjct: 136 SLSEKVTELEAIQNAGGYMAKVEDKDNGQYVLHEYNCPIAQVAGKYEQACSCELSLFESL 195 Query: 186 LGAKVTRTECMAEGGQSCRYAI 207 L KV RTEC+A+GG C Y I Sbjct: 196 LQTKVERTECLAKGGGRCSYTI 217 >A7NQC0.1 A7NQC0_ROSCS Putative transcriptional regulator Length = 212 Score = 194 bits (492), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 96/204 (47%), Positives = 140/204 (68%) Query: 5 QESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGR 64 +E G TRR I+ LL+ KGP+T L++ELGI +GVR+H+ LE++ L +T VR+A+GR Sbjct: 6 REQGETRRQILLLLRQKGPMTAAELSKELGIGAVGVRQHLALLERDGLVQTGGVRRAIGR 65 Query: 65 PLHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPMMEK 124 P H+Y+LT+ AE FPK+Y +L ++ L + G++A+ LFE RRKR+ +Y+P +E Sbjct: 66 PSHLYALTDAAEALFPKAYDHLLIDALEFVRAQGGEDAIERLFEARRKRLYVEYSPRLEG 125 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEE 184 R+L ERVAEL++I N GYM EW + DG+ + E+NCPI VA Y +AC E+AL+E+ Sbjct: 126 RSLPERVAELATILNEHGYMCEWRRLPDGAIELIEHNCPIDCVARSYPQACTHERALYED 185 Query: 185 LLGAKVTRTECMAEGGQSCRYAIT 208 LL A V R + +A G+ CR+ I Sbjct: 186 LLRAPVERQQTIAADGRCCRFRIA 209 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.130 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,186,594,537 Number of extensions: 43461511 Number of successful extensions: 125508 Number of sequences better than 1.0e-05: 425 Number of HSP's gapped: 124851 Number of HSP's successfully gapped: 425 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)