BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0008.p
         (158 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJZ3.1 B3KJZ3_9BACI General stress protein                           83   1e-14
B1D7H3.1 B1D7H3_9BACL General stress protein                           67   8e-10
A8VUH5.1 A8VUH5_9BACI Putative uncharacterized protein                 61   3e-08
A8VWR9.1 A8VWR9_9BACI Putative uncharacterized protein                 60   6e-08
A8UDB9.1 A8UDB9_9LACT Putative uncharacterized protein                 55   1e-06

>B3KJZ3.1 B3KJZ3_9BACI General stress protein
          Length = 120

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 1   MKKDTKSLLWGILAGSVVGSVTALLFAPKAGKELRKDIAEGTAEAAHKVQEIAGAASDKG 60
           MK+ +K LLWG+L GSV GSVTALL APK+GKELR DIA+G      KVQE A    ++G
Sbjct: 1   MKEKSKGLLWGVLIGSVAGSVTALLLAPKSGKELRDDIADGARGIGAKVQEAAEKVGEQG 60

Query: 61  TELYSKAKDAVESVVIEVKEW-GRQYTGTDEKKAVEVSGI 99
             L     D  E+V+ +++ W  RQ +   E++  +VS  
Sbjct: 61  VNLIGIMTDRAENVISDIQSWRNRQESWLAEEEIAQVSSF 100


>B1D7H3.1 B1D7H3_9BACL General stress protein
          Length = 131

 Score = 66.6 bits (161), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 42/60 (70%), Gaps = 8/60 (13%)

Query: 3  KDTKSLLWGILAGSVVGSVTALLFAPKAGKELRKDIAEGTAEAAHKVQE----IAGAASD 58
          K TK  L+G +AG ++GSVTALLFAPKAGKELR DI+EG    A +VQE     AG  SD
Sbjct: 5  KQTKGFLFGAIAGGIIGSVTALLFAPKAGKELRHDISEG----ARRVQENTVRAAGQVSD 60


>A8VUH5.1 A8VUH5_9BACI Putative uncharacterized protein
          Length = 148

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 2  KKDTKSLLWGILAGSVVGSVTALLFAPKAGKELRKDIAEGTAEAAHKVQEIAGAASDKGT 61
          K DTK  + G + G V+G+  A+L APK+G+ELR DI E   EA  +  E+   A  KG 
Sbjct: 3  KMDTKDFMLGAVIGGVIGAAAAVLMAPKSGRELRSDITERAGEAKERTVELTETAKGKGA 62

Query: 62 ELYSKAKDAVESVVIEVK-EWGR---QYTGTDEK 91
          E Y  AK+  E +    K +W R   + TG  EK
Sbjct: 63 EYYDVAKEKSEELTSAAKQQWDRVADKATGVSEK 96


>A8VWR9.1 A8VWR9_9BACI Putative uncharacterized protein
          Length = 146

 Score = 60.1 bits (144), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%)

Query: 1  MKKDTKSLLWGILAGSVVGSVTALLFAPKAGKELRKDIAEGTAEAAHKVQEIAGAASDKG 60
          M    K+ + G++ G+  G+V  L  APKAG ELR+D +E    A HK  +    A +KG
Sbjct: 1  MSSSAKNFIAGVVVGATAGAVVTLFMAPKAGSELREDFSEQARAAKHKTSDFTSQAVEKG 60

Query: 61 TELYSKAKDAVESVVIEVKEWGR 83
            L ++  D   ++V +VK+  R
Sbjct: 61 NHLATRVSDQSSNLVHKVKDLSR 83


>A8UDB9.1 A8UDB9_9LACT Putative uncharacterized protein
          Length = 223

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 22 TALLFAPKAGKELRKDIAEGTAEAAHKVQEIAGAASDKGTELYSKAKDAVESVVIEVKEW 81
          TALL+APK+GKELR+++ + T  A    +E A  A +KG E+ + AKDA E + I +KE 
Sbjct: 21 TALLYAPKSGKELREELNQQTTNAKGSAKEYADIAKEKGREMKNVAKDASEDIKISLKES 80

Query: 82 GRQ 84
            Q
Sbjct: 81 ASQ 83


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.306    0.124    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 679,659,738
Number of extensions: 19740774
Number of successful extensions: 51394
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 51395
Number of HSP's successfully gapped: 40
Length of query: 158
Length of database: 3,060,696,203
Length adjustment: 119
Effective length of query: 39
Effective length of database: 1,939,595,418
Effective search space: 75644221302
Effective search space used: 75644221302
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 125 (52.8 bits)