BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0005.p
         (110 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6NT12.1 A6NT12_9BACE Putative uncharacterized protein                 73   8e-12
B6FSI1.1 B6FSI1_9CLOT Putative uncharacterized protein                 62   2e-08

>A6NT12.1 A6NT12_9BACE Putative uncharacterized protein
          Length = 539

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 17  ALIVSC-AILGLSLFFSVHHLFMYYIFQPYSTELNVKNPFFSIVNSIVLAVGVVCMQFQS 75
           AL++ C A+L L++FFSVH LF+YYIFQPY+ +L VKNPFF I+N +V  +  +C+Q + 
Sbjct: 445 ALVLFCLAVLSLAVFFSVHPLFLYYIFQPYTAQLAVKNPFFGILNWVVYFLCWMCLQIKQ 504

Query: 76  SPXXXXXXXXXXXXXXXXXXXXXVYKYSSRTFRVK 110
                                  V+  + +TFR+K
Sbjct: 505 PTSVFTLLVVACTVAYSAVALAVVWNRAEKTFRIK 539


>B6FSI1.1 B6FSI1_9CLOT Putative uncharacterized protein
          Length = 541

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%)

Query: 7   LSGEHWGVGEALIVSCAILGLSLFFSVHHLFMYYIFQPYSTELNVKNPFFSIVNSIVLAV 66
           L GE   V + + +    L LS FF + HLFMYYI QPY+ E  VK+P FS+VN++V   
Sbjct: 438 LCGEILAVWKVIPLMAGSLLLSAFFCLFHLFMYYITQPYTEEKTVKSPIFSVVNALVYFG 497

Query: 67  GVVCMQFQSSPXXXXXXXXXXXXXXXXXXXXXVYKYSSRTFRVK 110
             +C+Q Q+                       V++++ +TF+++
Sbjct: 498 CYLCLQIQTGSWLFTLGVLAVTIIFIPLSYFCVFRFAPKTFKIR 541


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.142    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 477,719,437
Number of extensions: 14896613
Number of successful extensions: 46360
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 46358
Number of HSP's successfully gapped: 4
Length of query: 110
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 33
Effective length of database: 2,335,278,048
Effective search space: 77064175584
Effective search space used: 77064175584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)