BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0003.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6NT11.1 A6NT11_9BACE Putative uncharacterized protein 292 1e-77 B6FSI2.1 B6FSI2_9CLOT Putative uncharacterized protein 278 4e-73 Q46GC4.1 Q46GC4_METBF Gliding motility protein 273 8e-72 B1C135.1 B1C135_9FIRM Putative uncharacterized protein 270 8e-71 B9WY39.1 B9WY39_STRSU ABC transporter related protein 269 1e-70 >A6NT11.1 A6NT11_9BACE Putative uncharacterized protein Length = 237 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 142/233 (60%), Positives = 181/233 (77%), Gaps = 3/233 (1%) Query: 6 LQLILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSGETRMDSGGAF 65 ++LIL+ I K F K VLKG F+F QG+IYGLLGRNGAGKT+L NCL+GE D GGAF Sbjct: 1 MKLILEGIEKHFGEKQVLKGASFSFAQGRIYGLLGRNGAGKTTLMNCLAGEFPPD-GGAF 59 Query: 66 LRRNE--VSLPLREEEIGYVFSLPILPEFLTGYEFVKFYMDINQDKIQSGRTIDGYFDII 123 + PL E ++GYV S P++PEFLTG+EFVKF+ +IN K +GRT D + D++ Sbjct: 60 CVEDGDGQRRPLAEGDVGYVLSTPVVPEFLTGWEFVKFFQEINAGKDPTGRTPDDWLDLV 119 Query: 124 RFEQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALEIKKLLREMK 183 + EDR RL+K YSHGMKNK+QMLCF+I RPP+ILLDEPLTSFDVV A E+K LL EMK Sbjct: 120 GIDAEDRCRLMKDYSHGMKNKMQMLCFLIARPPVILLDEPLTSFDVVAAKEMKDLLIEMK 179 Query: 184 QDHIIIFSTHILQLAADLCDELVILNNGVLQEIPADTLHSPEFEEQIIALLKD 236 +DHII+FSTHILQLAADLCDE+V+L++G L+E+ +H+PEFE +++ LLK+ Sbjct: 180 EDHIILFSTHILQLAADLCDEIVLLHHGTLEEVDPSIIHTPEFENRVVELLKE 232 >B6FSI2.1 B6FSI2_9CLOT Putative uncharacterized protein Length = 233 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 144/235 (61%), Positives = 184/235 (78%), Gaps = 2/235 (0%) Query: 6 LQLILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSGETRMDSGGAF 65 ++L L ++K+FD K VLKG F FE+GKIYGLLGRNGAGKT+LFNC+S E D A Sbjct: 1 MRLELREVQKAFDQKQVLKGASFVFEKGKIYGLLGRNGAGKTTLFNCISKEISCDGEIAL 60 Query: 66 LRRNEVSLPLREEEIGYVFSLPILPEFLTGYEFVKFYMDINQDKIQSGRTIDGYFDIIRF 125 + L + IG+ ++ PILPEFLTGYEF+KFY+DIN+DKI+ ++I YFD+I+ Sbjct: 61 YDGADDILDFSQ--IGFTYAHPILPEFLTGYEFLKFYIDINKDKIKDKKSIPEYFDMIKI 118 Query: 126 EQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALEIKKLLREMKQD 185 ++ED +RLIK YSHGMKNK+QM+CF+IT+PP+ILLDEPLTSFDVVVA EIK++L+ MKQD Sbjct: 119 KEEDWYRLIKDYSHGMKNKMQMICFLITKPPVILLDEPLTSFDVVVAHEIKQMLKAMKQD 178 Query: 186 HIIIFSTHILQLAADLCDELVILNNGVLQEIPADTLHSPEFEEQIIALLKDGSHD 240 HIIIFSTHIL+LA DLCDE+VILN G L+ I + + +PEFEE+I LK+ HD Sbjct: 179 HIIIFSTHILELAEDLCDEIVILNQGKLEAIDHNMIGAPEFEEKIFEALKEEQHD 233 >Q46GC4.1 Q46GC4_METBF Gliding motility protein Length = 235 Score = 273 bits (698), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 132/235 (56%), Positives = 179/235 (76%) Query: 6 LQLILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSGETRMDSGGAF 65 ++LIL++I KSFD K VL+G F FE+G+IYGLLGRNG+GKT+LFNC++ + R+D G Sbjct: 1 MKLILNDIVKSFDKKEVLRGASFAFEKGEIYGLLGRNGSGKTTLFNCINEDLRIDGGSIL 60 Query: 66 LRRNEVSLPLREEEIGYVFSLPILPEFLTGYEFVKFYMDINQDKIQSGRTIDGYFDIIRF 125 L N V + ++IGYV S P++PEFLTG EF+KF++DIN KI + ID YFD ++ Sbjct: 61 LEENGVQREICPDDIGYVLSTPVVPEFLTGREFLKFFLDINVKKIPDIKPIDEYFDFVKI 120 Query: 126 EQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALEIKKLLREMKQD 185 E EDR RL+K YSHGMK+K+QML I P ++LLDEPLTSFDVVVA E+K LLR++K+D Sbjct: 121 ESEDRDRLLKDYSHGMKSKMQMLISFIANPSILLLDEPLTSFDVVVADEMKTLLRQIKKD 180 Query: 186 HIIIFSTHILQLAADLCDELVILNNGVLQEIPADTLHSPEFEEQIIALLKDGSHD 240 HIIIFSTHI++LA DLCDE+VIL+ GVL+++ D L + F+++I+ L+ +D Sbjct: 181 HIIIFSTHIMELALDLCDEIVILSGGVLEKMEKDDLSNGAFKDKILQALRRDEND 235 >B1C135.1 B1C135_9FIRM Putative uncharacterized protein Length = 235 Score = 270 bits (690), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 180/234 (76%) Query: 6 LQLILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSGETRMDSGGAF 65 ++LI+++++KSF+ K VLK I FTF+ GKIYGLLGRNGAGKT+LFNCL+ + +D G Sbjct: 1 MELIIEHLQKSFEKKEVLKDISFTFKPGKIYGLLGRNGAGKTTLFNCLNQDITIDKGIVL 60 Query: 66 LRRNEVSLPLREEEIGYVFSLPILPEFLTGYEFVKFYMDINQDKIQSGRTIDGYFDIIRF 125 L+ N L E+IGYV S P +PEFLT EF+KF+++IN+ +I ++ID YFD I Sbjct: 61 LQENNQQRALEIEDIGYVLSTPTVPEFLTAREFLKFFLEINEKQITDLKSIDEYFDYINI 120 Query: 126 EQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALEIKKLLREMKQD 185 ++EDR RL+K +SHGMKNK+QML II +P ++LLDEPLTS DVVVA E+K +LR +K+D Sbjct: 121 KKEDRDRLLKDFSHGMKNKMQMLINIILKPNVLLLDEPLTSLDVVVAEEMKNVLRHLKED 180 Query: 186 HIIIFSTHILQLAADLCDELVILNNGVLQEIPADTLHSPEFEEQIIALLKDGSH 239 I+I STHI++LA DLCDE+VILN+G LQE+ D L + EF+++I+A+L++ + Sbjct: 181 RILILSTHIMELALDLCDEIVILNHGKLQEVSKDQLDNDEFKDKILAMLREEDY 234 >B9WY39.1 B9WY39_STRSU ABC transporter related protein Length = 232 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 121/229 (52%), Positives = 175/229 (76%) Query: 6 LQLILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSGETRMDSGGAF 65 +QL L ++ K FD+K +L+ FTFEQGKIYGLLGRNGAGKT+LFNC++ +D G Sbjct: 1 MQLKLSSVSKKFDHKIILEDTSFTFEQGKIYGLLGRNGAGKTTLFNCIARNLTLDGGSIQ 60 Query: 66 LRRNEVSLPLREEEIGYVFSLPILPEFLTGYEFVKFYMDINQDKIQSGRTIDGYFDIIRF 125 ++E++ +IG+ + P LP F+T YEFV+FYMDI++DK++S R+ + + +++ Sbjct: 61 FVKDEIAFDYDNTDIGFTQTYPQLPAFMTAYEFVRFYMDIHKDKLKSPRSPEEWLNLVGI 120 Query: 126 EQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALEIKKLLREMKQD 185 +EDRHRL+K +SHGM+NK+Q+L +I +PP++LLDEPLTSFD V A E K+L+RE K+D Sbjct: 121 GEEDRHRLLKDFSHGMQNKVQLLLSLIVQPPVLLLDEPLTSFDPVAAHEFKQLIREAKKD 180 Query: 186 HIIIFSTHILQLAADLCDELVILNNGVLQEIPADTLHSPEFEEQIIALL 234 +IIFSTHILQLA DLCDE+V+L++ LQ +P+D LH P+FE++++ LL Sbjct: 181 SVIIFSTHILQLAQDLCDEIVLLHHQELQAVPSDKLHDPDFEQEVVTLL 229 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.144 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,418,576,061 Number of extensions: 59540428 Number of successful extensions: 401595 Number of sequences better than 1.0e-05: 46079 Number of HSP's gapped: 373832 Number of HSP's successfully gapped: 47693 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)