BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0001.p (178 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFN7.1 B3KFN7_9BACI Putative uncharacterized protein 189 7e-47 Q24VL7.1 Q24VL7_DESHY Putative uncharacterized protein 159 1e-37 B8G2I4.1 B8G2I4_DESHD Putative uncharacterized protein 157 5e-37 B1DHQ3.1 B1DHQ3_9BACL Putative uncharacterized protein 129 1e-28 C0ZKZ3.1 C0ZKZ3_BREBN Conserved hypothetical membrane protein 109 9e-23 >B3KFN7.1 B3KFN7_9BACI Putative uncharacterized protein Length = 177 Score = 189 bits (481), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 93/177 (52%), Positives = 127/177 (71%) Query: 1 METLYLGCLALGVIFAVVSVLLGDLIGSALDGIFDVVSFHFISPAVLAGGITVFGGAGIL 60 ME LY GCL GVIFA+V+V+LGD++ SALDG+ D +S F +P V+AGGITVFGG GI+ Sbjct: 1 MEALYWGCLIGGVIFAIVTVVLGDILSSALDGLLDFLSVDFFNPVVIAGGITVFGGTGIM 60 Query: 61 LTRYSSLEKGPVLALSLLTAAFMGVVMYLGVVKPVNKSEMSSGFSMSELPGKIGEITVPV 120 LT+Y+ L G + LS+L A + +++Y G VKP+ SE S+GFS+ EL G+IG +TVP+ Sbjct: 61 LTKYTELAAGAHVTLSVLAAIVISILVYFGYVKPMENSENSTGFSIKELAGRIGVVTVPL 120 Query: 121 PAQGYGEIMVKFGAGNSLHTAASFDHHPLPAGIKXXXXXXXXXXXXXSEFEQRRGVD 177 PA+G+GE+MVK GAGN++H A+SFD LPAG++ SE E+R+G D Sbjct: 121 PAEGFGEVMVKVGAGNTMHIASSFDRQTLPAGVRVVVVDIVDGVLRVSELEERKGED 177 >Q24VL7.1 Q24VL7_DESHY Putative uncharacterized protein Length = 183 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/157 (47%), Positives = 113/157 (71%), Gaps = 3/157 (1%) Query: 1 METLYLGCLALGVIFAVVSVLLGDLIGSALDGIFDVVSFH---FISPAVLAGGITVFGGA 57 M LY CL+ GV+FA+VS++ GD++G DG+FD +SF F+ P VL GG+T+FGG+ Sbjct: 1 MLELYWMCLSGGVLFALVSIIFGDVLGDIFDGVFDALSFDHVDFLHPMVLVGGVTIFGGS 60 Query: 58 GILLTRYSSLEKGPVLALSLLTAAFMGVVMYLGVVKPVNKSEMSSGFSMSELPGKIGEIT 117 G++L+RY+++E PV LSL+ A + +V+Y VKP+ SE S+GFSM +L GKIGE++ Sbjct: 61 GVMLSRYTAMEPVPVALLSLMIAIALSIVVYFAYVKPMKNSENSTGFSMKDLVGKIGEVS 120 Query: 118 VPVPAQGYGEIMVKFGAGNSLHTAASFDHHPLPAGIK 154 VP+P GYGE++++ GAGN+ AA+ + +PAG + Sbjct: 121 VPIPVGGYGEVILRVGAGNTNQIAATLEQVDIPAGTR 157 >B8G2I4.1 B8G2I4_DESHD Putative uncharacterized protein Length = 177 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 73/157 (46%), Positives = 113/157 (71%), Gaps = 3/157 (1%) Query: 1 METLYLGCLALGVIFAVVSVLLGDLIGSALDGIFDVVSFH---FISPAVLAGGITVFGGA 57 M +Y CL+ GV+FA+VS++ GD++G DG+FD +SF F+ P VL GG+T+FGG+ Sbjct: 1 MLEVYWMCLSGGVLFALVSIIFGDVLGDIFDGVFDALSFDHVDFLHPMVLVGGVTIFGGS 60 Query: 58 GILLTRYSSLEKGPVLALSLLTAAFMGVVMYLGVVKPVNKSEMSSGFSMSELPGKIGEIT 117 G++L+RY+++E PV LSL+ A + +++Y VKP+ SE S+GFSM +L GKIGE++ Sbjct: 61 GVMLSRYTAMEPVPVALLSLMIAIALSILVYFAYVKPMKNSENSTGFSMKDLVGKIGEVS 120 Query: 118 VPVPAQGYGEIMVKFGAGNSLHTAASFDHHPLPAGIK 154 VP+P GYGE++++ GAGN+ AA+ + +PAG + Sbjct: 121 VPIPVGGYGEVILRVGAGNTNQIAATLEQADIPAGTR 157 >B1DHQ3.1 B1DHQ3_9BACL Putative uncharacterized protein Length = 176 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 3/157 (1%) Query: 1 METLYLGCLALGVIFAVVSVLLGDLIGSALDGIFDVVSFH---FISPAVLAGGITVFGGA 57 ME ++ GCL G ++A++S LLGDLIG AL GI D +S +++P L GGIT FGGA Sbjct: 1 MEAVFWGCLIGGALYAIISALLGDLIGHALGGILDFLSLDGHPWLNPTTLVGGITAFGGA 60 Query: 58 GILLTRYSSLEKGPVLALSLLTAAFMGVVMYLGVVKPVNKSEMSSGFSMSELPGKIGEIT 117 G+LL Y+SL V L+L G Y VKP+++SE S S +L GKI E+ Sbjct: 61 GLLLAHYTSLGLAAVFILALAGGVVFGGSGYFLYVKPMSESENSIALSEKDLSGKIAEVI 120 Query: 118 VPVPAQGYGEIMVKFGAGNSLHTAASFDHHPLPAGIK 154 +P++GYGE++VK GAG + AASFD +P G + Sbjct: 121 TAIPSKGYGEVLVKAGAGYTNQIAASFDGDEIPGGSR 157 >C0ZKZ3.1 C0ZKZ3_BREBN Conserved hypothetical membrane protein Length = 179 Score = 109 bits (273), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 59/154 (38%), Positives = 95/154 (61%), Gaps = 4/154 (2%) Query: 1 METLYLGCLALGVIFAVVSVLLGDLIGSALDGIFDVVSFHFISPAVLAGGITVFGGAGIL 60 +ET+Y+ CL LG+++ ++S+L GD AL + F P +L G+T FGGAG L Sbjct: 4 LETVYIVCLVLGLLYTLISLLFGD----ALSDWLGHLHLPFAQPILLVSGMTAFGGAGYL 59 Query: 61 LTRYSSLEKGPVLALSLLTAAFMGVVMYLGVVKPVNKSEMSSGFSMSELPGKIGEITVPV 120 L+RY+SL VL L+ + + +V Y VKP++ +E S+ +SMS+L GK+GE+ + Sbjct: 60 LSRYTSLGAFVVLMLAAVIGIALALVSYFLWVKPMSHAENSTSYSMSQLGGKLGEVGTTI 119 Query: 121 PAQGYGEIMVKFGAGNSLHTAASFDHHPLPAGIK 154 PA+G GE+++ +G + H AAS + +P G + Sbjct: 120 PAEGLGEVLLPMISGTTYHMAASLEGQVIPQGAR 153 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 979,481,770 Number of extensions: 39594957 Number of successful extensions: 125612 Number of sequences better than 1.0e-05: 29 Number of HSP's gapped: 125625 Number of HSP's successfully gapped: 29 Length of query: 178 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 51 Effective length of database: 1,864,227,298 Effective search space: 95075592198 Effective search space used: 95075592198 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)