BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0077.p (259 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG15.1 B3KG15_9BACI Putative uncharacterized protein 329 1e-88 B1DFR3.1 B1DFR3_9BACL Putative uncharacterized protein 236 1e-60 C0ZB51.1 C0ZB51_BREBN Putative uncharacterized protein 221 7e-56 Q5WHF8.1 Q5WHF8_BACSK Putative uncharacterized protein 199 2e-49 B8CXK8.1 B8CXK8_HALOH Putative uncharacterized protein 199 2e-49 >B3KG15.1 B3KG15_9BACI Putative uncharacterized protein Length = 256 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 175/254 (68%), Positives = 203/254 (79%), Gaps = 2/254 (0%) Query: 1 MQRYFVTPEQFHPDTVMISGEDARHIAKVMRGKAGDKLIVSDGVSREALVEIAGIEPGEV 60 MQRYFVTP QF D V I+G+DARHIAKVMRG+ GDKLIVSDGVSREAL+EI I+ G V Sbjct: 1 MQRYFVTPAQFEGDRVEITGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSV 60 Query: 61 TVNILELLDMTHEPRIKITVAQSLPKGDKLETVIQKCTEIGAVAFVPFLSERTIVQYDER 120 ++E ++M+ EP +++++AQSLPKGDK+ETVIQKCTEIGAV+FVPFLSERTIVQYD + Sbjct: 61 FAVVIEPMEMSQEPLLQVSIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAK 120 Query: 121 KESKRLERWRKICKEAAEQAHRNIVPEVHSPLSWKLLLKSFSGYDAVYFCYEKEEG--LQ 178 KE KRLERWRKI KEAAEQAHRN +P V PL+WK LL +FSGYDAVYFCYEKE+G L+ Sbjct: 121 KEGKRLERWRKIAKEAAEQAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLR 180 Query: 179 XXXXXXXXXXXXXXXXTGKVMVVVGPEGGFSPEECRAAEEAGAVSVGLGRRILRCETAGM 238 +++VVGPEGGF+ EECRAAE AGAV+VGLGRRILRCETAGM Sbjct: 181 DVLKPFAEQALRESAKPASLLLVVGPEGGFTEEECRAAEAAGAVAVGLGRRILRCETAGM 240 Query: 239 VAAACILYESGEMG 252 A AC LYESGEMG Sbjct: 241 TALACALYESGEMG 254 >B1DFR3.1 B1DFR3_9BACL Putative uncharacterized protein Length = 258 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 134/256 (52%), Positives = 160/256 (62%), Gaps = 4/256 (1%) Query: 1 MQRYFVTPEQFHPDTVMISGEDARHIAKVMRGKAGDKLIVSDGVSREALVEIAGIEPGEV 60 MQRYFV EQF +V + GEDA H +VMR K +K I SDG+SR L + EV Sbjct: 1 MQRYFVAAEQFDGSSVRLIGEDAFHAVRVMRMKPEEKFIASDGISRVVLASVREAASSEV 60 Query: 61 TVNILELLDMTHEPRIKITVAQSLPKGDKLETVIQKCTEIGAVAFVPFLSERTIVQYDER 120 +I+E L M E +T+AQSLPKGDK+E VIQK TEIGA AF PF SER IVQYD + Sbjct: 61 VADIVEELPMDSESSWSVTIAQSLPKGDKMELVIQKGTEIGAYAFAPFQSERMIVQYDGK 120 Query: 121 KESKRLERWRKICKEAAEQAHRNIVPEVHSPLSWKLLLKSFSGYDAVYFCYEKE----EG 176 KE+KRLERW KI KEAAEQ+HR VP + SW+ L + +D FCYE+E G Sbjct: 121 KEAKRLERWSKIAKEAAEQSHRCRVPAIEPVRSWRELKEVIPTFDLALFCYEREGDAAAG 180 Query: 177 LQXXXXXXXXXXXXXXXXTGKVMVVVGPEGGFSPEECRAAEEAGAVSVGLGRRILRCETA 236 KV+++VGPEGGF+ E AE AGAV VGLGRRILR ETA Sbjct: 181 TGIRDAVLNWKQAGHMAAEPKVLLIVGPEGGFTEREADEAEAAGAVIVGLGRRILRTETA 240 Query: 237 GMVAAACILYESGEMG 252 G+V C+LYE+GEMG Sbjct: 241 GIVGLTCLLYEAGEMG 256 >C0ZB51.1 C0ZB51_BREBN Putative uncharacterized protein Length = 252 Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 112/247 (45%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MQRYFVTPEQFHPDTVMISGEDARHIAKVMRGKAGDKLIVSDGVSREALVEIAGIEPGEV 60 MQRYFV P F + + I G+D HI VMR + G+++IVSDG R A ++ + EV Sbjct: 1 MQRYFVEPHSFTENELTIVGDDVHHIVNVMRAREGEEIIVSDGAGRSARAKLVYLSAKEV 60 Query: 61 TVNILELLDMTHEPRIKITVAQSLPKGDKLETVIQKCTEIGAVAFVPFLSERTIVQYDER 120 ++E+L E I++T+ Q LPKG+KLE ++QK TE+GA +F PF SERTIV+ D + Sbjct: 61 RAEVMEMLQEERELPIRVTIGQGLPKGEKLEWILQKGTELGAYSFFPFSSERTIVKLDAK 120 Query: 121 KESKRLERWRKICKEAAEQAHRNIVPEVHSPLSWKLLLKSFSGYDAVYFCYEKEEGLQXX 180 KE+K+LERWRKI KEAAEQ+HR ++PE+ SP+S++ +L++ Y YEKE Sbjct: 121 KEAKKLERWRKIVKEAAEQSHRAVLPELLSPVSFREILEAGQSYTHCAIAYEKE------ 174 Query: 181 XXXXXXXXXXXXXXTGKVMVVVGPEGGFSPEECRAAEEAGAVSVGLGRRILRCETAGMVA 240 + ++V+VGPEGGFSPEE AE G ++V LG RILR ETA Sbjct: 175 GSTTIHQVLEEMTASDSLLVLVGPEGGFSPEEVAQAESKGFLTVSLGPRILRTETASQYV 234 Query: 241 AACILYE 247 AC Y+ Sbjct: 235 LACASYQ 241 >Q5WHF8.1 Q5WHF8_BACSK Putative uncharacterized protein Length = 248 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/247 (43%), Positives = 150/247 (60%), Gaps = 2/247 (0%) Query: 1 MQRYFVTPEQFHPDTVMISGEDARHIAKVMRGKAGDKLIVSDGVSREALVEIAGIEPGEV 60 MQRYF+ EQ + V I+G+DA HI KVMR +AGD++I + + LV+++ +P V Sbjct: 1 MQRYFIKNEQLTNEVVEITGDDAAHITKVMRMQAGDEVICVNEDGKAVLVQLSQFDPSSV 60 Query: 61 TVNILELLDMTHEPRIKITVAQSLPKGDKLETVIQKCTEIGAVAFVPFLSERTIVQYDER 120 +L +D E I++TVAQ LPKGDKLET++QK TE+GA AF PF + R+IV++DE+ Sbjct: 61 KGTVLNEMDNETELPIRVTVAQGLPKGDKLETIVQKGTELGAYAFAPFSASRSIVKWDEK 120 Query: 121 KESKRLERWRKICKEAAEQAHRNIVPEVHSPLSWKLLLKSFSGYDAVYFCYEKEEGLQXX 180 K +K+ ER +KI KEAAEQAHR VP V P+ K++ ++ + YD C E EE Q Sbjct: 121 KGAKKTERLQKIAKEAAEQAHRLFVPNVAKPVPLKVVAEALTHYDVCIVCDE-EEAKQGE 179 Query: 181 XXXXXXXXXXXXXXTGKVMVVVGPEGGFSPEECRAAEEAGAVSVGLGRRILRCETAGMVA 240 ++V+VGPEGG + EE GAVS +G RI+R ETA M Sbjct: 180 KANLKRAFAMLKPGLS-LLVIVGPEGGLTREEVALLSAKGAVSCSIGPRIVRTETAAMYV 238 Query: 241 AACILYE 247 A + Y+ Sbjct: 239 LAALSYQ 245 >B8CXK8.1 B8CXK8_HALOH Putative uncharacterized protein Length = 249 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 150/252 (59%), Gaps = 4/252 (1%) Query: 1 MQRYFVTPEQFHPDTVMISGEDARHIAKVMRGKAGDKLIVSDGVSREALVEIAGIEPGEV 60 M R+FV+ EQ D V+I G D HI +R GDKLIV G R+ + I I+ ++ Sbjct: 1 MHRFFVSEEQIRDDLVIIKGNDYNHIVNSLRLNPGDKLIVCPGNCRDYVATIEEIKENQI 60 Query: 61 TVNILELLDMTHEPRIKITVAQSLPKGDKLETVIQKCTEIGAVAFVPFLSERTIVQYDER 120 T I++ +EP + IT+AQ+LPK K++ VIQK TEIG + +P + RTIV+ +++ Sbjct: 61 TGKIIKEYKNRNEPSLNITLAQALPKKRKMDLVIQKATEIGVRSIIPLKTTRTIVRLNKK 120 Query: 121 KESKRLERWRKICKEAAEQAHRNIVPEVHSPLSWKLLLKSFSGYDAVYFCYEKEEGLQXX 180 KE K+ +RW+KI KEAA+Q+ R +P V S K L + S +D + +E+E+G Sbjct: 121 KERKKTDRWQKIAKEAAKQSGRGRIPTVERVYSLKELTQFKSNFDLIIIPWEEEQG---- 176 Query: 181 XXXXXXXXXXXXXXTGKVMVVVGPEGGFSPEECRAAEEAGAVSVGLGRRILRCETAGMVA 240 K++V++GPEGGF PEE + E+ G + + LG RILR ETAG+V Sbjct: 177 KNLKNVLSTVNVSEISKILVIIGPEGGFPPEEIKFIEQLGGIPITLGPRILRTETAGLVV 236 Query: 241 AACILYESGEMG 252 +LYESG++G Sbjct: 237 LTMLLYESGDLG 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,419,715,176 Number of extensions: 51134431 Number of successful extensions: 147336 Number of sequences better than 1.0e-05: 1306 Number of HSP's gapped: 145586 Number of HSP's successfully gapped: 1311 Length of query: 259 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 126 Effective length of database: 1,807,701,208 Effective search space: 227770352208 Effective search space used: 227770352208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)