BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0074.p (206 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LX92.1 A6LX92_CLOB8 DNA-3-methyladenine glycosylase I EC=3.2.2.20 256 6e-67 C1UGX7.1 C1UGX7_9ACTN DNA-3-methyladenine glycosylase I EC=3.2.2.20 251 2e-65 C1W942.1 C1W942_9GAMM DNA-3-methyladenine glycosylase I EC=3.2.2.20 251 4e-65 C0Z5H8.1 C0Z5H8_BREBN DNA-3-methyladenine glycosylase I EC=3.2.2.20 246 8e-64 A6PPG7.1 A6PPG7_9BACT DNA-3-methyladenine glycosylase I EC=3.2.2.20 241 2e-62 >A6LX92.1 A6LX92_CLOB8 DNA-3-methyladenine glycosylase I EC=3.2.2.20 Length = 190 Score = 256 bits (655), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 115/185 (62%), Positives = 143/185 (77%) Query: 13 LILQITRCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHF 72 +I I RC+WV ++ LYI YHD+EWG P+YDDRKLFE+L LEG QAGLSW+T+LKKRE++ Sbjct: 1 MIQIIKRCEWVTKEELYIEYHDKEWGVPVYDDRKLFEMLCLEGAQAGLSWWTILKKRENY 60 Query: 73 REVFDGFDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYL 132 +E FD F+ KIV Y E K+E LMQD GI+RNR KI++V+ NA F +I E G F+NY+ Sbjct: 61 KEAFDNFEAEKIVKYTEEKLEQLMQDKGIVRNRRKIESVVTNAKAFLKIREEYGSFSNYI 120 Query: 133 WSFTGGKPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHT 192 W F KP+IN WK EVPA++ SD+MSK LKK G KFVGSTICY+FMQA GMV+DHT Sbjct: 121 WKFVDNKPIINLWKRIGEVPASTELSDKMSKQLKKDGFKFVGSTICYSFMQAVGMVNDHT 180 Query: 193 ADCFC 197 +CFC Sbjct: 181 TECFC 185 >C1UGX7.1 C1UGX7_9ACTN DNA-3-methyladenine glycosylase I EC=3.2.2.20 Length = 190 Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 105/179 (58%), Positives = 142/179 (79%) Query: 19 RCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFREVFDG 78 RC W + P+Y+ YHD EWG+P +DDR LFELL+LEG QAGLSW T+LKKRE +RE FDG Sbjct: 6 RCSWAGDVPVYVDYHDNEWGRPTHDDRMLFELLVLEGAQAGLSWLTILKKREAYREAFDG 65 Query: 79 FDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWSFTGG 138 FDP K+ LYDEAK+E LM + GI+RNRLKI A + NA +F +++RE G F ++W + G Sbjct: 66 FDPAKVALYDEAKVEELMANEGIVRNRLKINAAVTNAKLFLDVAREFGSFNAFIWGYVDG 125 Query: 139 KPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTADCFC 197 +P++N+WKT+++VPAT+P SD++SK LKK+G KFVGSTI YA++Q+ G+V+DH DC+ Sbjct: 126 EPIVNRWKTQADVPATTPLSDRISKDLKKRGFKFVGSTIVYAYLQSIGIVNDHVVDCYA 184 >C1W942.1 C1W942_9GAMM DNA-3-methyladenine glycosylase I EC=3.2.2.20 Length = 182 Score = 251 bits (640), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 114/179 (63%), Positives = 138/179 (77%), Gaps = 1/179 (0%) Query: 18 TRCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFREVFD 77 TRC WV++DPLYI YHD EWG P YDD++LFE+L LEG QAGLSW TVLKKR+H+R+VFD Sbjct: 3 TRCGWVSDDPLYIEYHDTEWGVPTYDDQELFEMLCLEGAQAGLSWITVLKKRKHYRKVFD 62 Query: 78 GFDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWSFTG 137 FD KI YDE K E L+ D GIIRN+LK+ A I NA + I +E F+ YLW F G Sbjct: 63 NFDAEKIAAYDEGKREELLSDAGIIRNKLKVNAFIVNAQNYLRI-KEERTFSEYLWQFVG 121 Query: 138 GKPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTADCF 196 G+P++N W++ +VP T+P+SD M+K LKK G KFVGSTICYAFMQA+GMVDDHT DCF Sbjct: 122 GEPIVNNWQSLKQVPVTTPESDAMAKQLKKDGFKFVGSTICYAFMQATGMVDDHTKDCF 180 >C0Z5H8.1 C0Z5H8_BREBN DNA-3-methyladenine glycosylase I EC=3.2.2.20 Length = 185 Score = 246 bits (628), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 110/179 (61%), Positives = 138/179 (77%) Query: 17 ITRCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFREVF 76 + RC WVN+DP+Y+ YHD EWG P+Y+DR LFE L LEG QAGLSWYT+LKKRE++R F Sbjct: 1 MNRCGWVNQDPIYMDYHDHEWGVPVYEDRLLFEYLNLEGAQAGLSWYTILKKRENYRRAF 60 Query: 77 DGFDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWSFT 136 D F+ KIV YDEAKIE L+ D GI+RNRLKI+ V++NA + + E G F++YLWSF Sbjct: 61 DNFEAEKIVQYDEAKIEQLLTDEGIVRNRLKIRGVVKNAHAYLRVVEEFGSFSSYLWSFV 120 Query: 137 GGKPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTADC 195 GGKP+ N ++ +VPA++ SD+MSK LKK+G FVGSTICYAFMQA GMV+DH A C Sbjct: 121 GGKPIHNHFQEMKDVPASTEISDKMSKDLKKRGFTFVGSTICYAFMQAVGMVNDHVATC 179 >A6PPG7.1 A6PPG7_9BACT DNA-3-methyladenine glycosylase I EC=3.2.2.20 Length = 193 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 135/184 (73%), Gaps = 1/184 (0%) Query: 18 TRCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFREVFD 77 TRC W + P+Y+ YHD EWG+P++DDRKLFE+L+LEGMQAGLSW TVLKKRE +R FD Sbjct: 5 TRCPWPGDIPVYVEYHDHEWGRPVHDDRKLFEMLILEGMQAGLSWITVLKKREAYRRAFD 64 Query: 78 GFDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWSFTG 137 GFDP KI YDEAKI+ LM D GIIRNRLKI+A + NA F E R+ G F +W++ Sbjct: 65 GFDPEKIARYDEAKIQELMTDPGIIRNRLKIRAAVTNAKAFLEAVRKHGSFDRMIWAYVD 124 Query: 138 GKPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTADCF- 196 P++ W EVPAT+P SD++S LKK G KFVGSTI Y+FMQA GMV+DH A CF Sbjct: 125 NTPIVGHWNRLEEVPATTPLSDRISCDLKKMGFKFVGSTIVYSFMQAVGMVNDHLAGCFV 184 Query: 197 CRSS 200 CR + Sbjct: 185 CRET 188 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,255,142,581 Number of extensions: 49597576 Number of successful extensions: 109281 Number of sequences better than 1.0e-05: 1086 Number of HSP's gapped: 108874 Number of HSP's successfully gapped: 1087 Length of query: 206 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 77 Effective length of database: 1,845,385,268 Effective search space: 142094665636 Effective search space used: 142094665636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)