BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0071.p (303 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HS57.1 B1HS57_LYSSC Biofilm dispersion protein bdlA (Chemotaxi... 314 8e-84 A3IDF1.1 A3IDF1_9BACI Putative uncharacterized protein 306 2e-81 C4L059.1 C4L059_EXISA Methyl-accepting chemotaxis sensory transd... 260 1e-67 B1YGL8.1 B1YGL8_EXIS2 Methyl-accepting chemotaxis sensory transd... 254 5e-66 A0AJF3.1 A0AJF3_LISW6 Complete genome 242 3e-62 >B1HS57.1 B1HS57_LYSSC Biofilm dispersion protein bdlA (Chemotaxis regulator bdlA) Length = 302 Score = 314 bits (804), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 142/296 (47%), Positives = 219/296 (73%) Query: 8 EVTDALVVKALEKNLALIRFTLDRRVAYVNEVFASTMKYRSEDMYGMQHRDFCFPAFANS 67 +VTD LVV+A+E+N+A+IRF +DRRVAYVNE+FA T+ Y +++ G H+DFC P F +S Sbjct: 7 QVTDDLVVQAIERNIAIIRFDMDRRVAYVNELFAKTLGYTVQELLGKNHKDFCLPNFVHS 66 Query: 68 PDYEIFWQDLLAGKSFQDKIERMDSEGGSVWLEATYMPIFDEADKQIIGVTKVATNITNR 127 P YE FW++L+AG S+QDKIER+D+ G VWLEATYMP+F ++IGV+K+ATNIT R Sbjct: 67 PAYEQFWRNLVAGNSYQDKIERIDANGHRVWLEATYMPVFANHSNKVIGVSKIATNITER 126 Query: 128 QTNMSNLVERMQQMADSLNQRAEQGIGRSRELLLSIDKIAGVSSENSLTLANLQSKAGDI 187 Q ++N+ +++++M++ L+QR+E GI S+ELL +I +++ S EN L LQ++A I Sbjct: 127 QNEITNVADQLKEMSNGLHQRSETGIQNSQELLSTIQEVSQESKENVSNLTQLQNQADSI 186 Query: 188 QGVVQTIRDIASQTHXXXXXXXXXXXXXGEFGRGFDVVAKEVRKLSAMVQDSISEVRESV 247 +G+V+TI++IA+QT+ GE+GRGFDVVAKEVRKLS V+ SISEV++++ Sbjct: 187 KGIVKTIQEIAAQTNLLALNAAIEAARAGEYGRGFDVVAKEVRKLSVRVEQSISEVKDNI 246 Query: 248 KGITEEIGRMSTGMDQVQGTVEESQRQIEVALREFTEIAASAQQLDNQAREVLDII 303 +GI EI +++ + ++ VE++ QI + ++F+EIA +A+ LD Q+++ ++II Sbjct: 247 EGIEREISQVTDSITKIAEKVEKTHEQITITTKDFSEIATAAEALDEQSKQFIEII 302 >A3IDF1.1 A3IDF1_9BACI Putative uncharacterized protein Length = 302 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 141/296 (47%), Positives = 215/296 (72%) Query: 8 EVTDALVVKALEKNLALIRFTLDRRVAYVNEVFASTMKYRSEDMYGMQHRDFCFPAFANS 67 +VTD LVV+A+E+N+A+IRF ++RRVAYVNE FA T+ Y ++M G H+DFC P F +S Sbjct: 7 QVTDDLVVQAIERNIAIIRFDMNRRVAYVNEPFARTLGYTVQEMLGKNHKDFCLPHFVHS 66 Query: 68 PDYEIFWQDLLAGKSFQDKIERMDSEGGSVWLEATYMPIFDEADKQIIGVTKVATNITNR 127 P YE FW++L+AG S+Q KIER+D G +WLEATYMP+F ++IGV+K+ATNIT R Sbjct: 67 PAYEQFWRNLVAGNSYQGKIERIDGNGQRIWLEATYMPVFANHTNKVIGVSKIATNITER 126 Query: 128 QTNMSNLVERMQQMADSLNQRAEQGIGRSRELLLSIDKIAGVSSENSLTLANLQSKAGDI 187 Q ++N+ +++++M++ L+QR+E GI S+ELL +I ++ S EN LA L+++A I Sbjct: 127 QNEITNVADQLKEMSNELHQRSEAGIQNSQELLSTIQVVSQESKENVSNLAQLKNQADSI 186 Query: 188 QGVVQTIRDIASQTHXXXXXXXXXXXXXGEFGRGFDVVAKEVRKLSAMVQDSISEVRESV 247 +G+V+TI++IASQT+ GE+GRGFDVVAKEVRKLS V+ SISEV++ + Sbjct: 187 KGIVKTIQEIASQTNLLALNAAIEAARAGEYGRGFDVVAKEVRKLSVRVEQSISEVKDHI 246 Query: 248 KGITEEIGRMSTGMDQVQGTVEESQRQIEVALREFTEIAASAQQLDNQAREVLDII 303 +GI EI +++ + ++ VE++ QI + ++F EIA++A+ LD Q+++ ++II Sbjct: 247 EGIEREISQVTDSITKIAEKVEKTNEQITITTKDFNEIASAAEALDEQSKQFIEII 302 >C4L059.1 C4L059_EXISA Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Length = 304 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 130/296 (43%), Positives = 195/296 (65%) Query: 8 EVTDALVVKALEKNLALIRFTLDRRVAYVNEVFASTMKYRSEDMYGMQHRDFCFPAFANS 67 VTD VV+A+E NLA+IRF RRVAYVNE+FA TM Y +++ G HRD C P FANS Sbjct: 9 HVTDTHVVRAIENNLAIIRFDEHRRVAYVNEIFAKTMGYEVKELMGRPHRDLCLPEFANS 68 Query: 68 PDYEIFWQDLLAGKSFQDKIERMDSEGGSVWLEATYMPIFDEADKQIIGVTKVATNITNR 127 P Y++FW+ L+ G S+ DKIER ++G SVWLEATYMPIFD+A++ +IGV+K+A +IT+R Sbjct: 69 PQYDLFWRKLMQGLSYHDKIERRAADGHSVWLEATYMPIFDDANQNVIGVSKIAADITSR 128 Query: 128 QTNMSNLVERMQQMADSLNQRAEQGIGRSRELLLSIDKIAGVSSENSLTLANLQSKAGDI 187 Q ++ ++ +Q+ ++ L+ +++ G +L ++ I S++N L LQ +A I Sbjct: 129 QQDVLHMANDLQETSEYLSAQSQIGKQDGEHVLENVKLIEQESTQNLEHLKALQQEAKTI 188 Query: 188 QGVVQTIRDIASQTHXXXXXXXXXXXXXGEFGRGFDVVAKEVRKLSAMVQDSISEVRESV 247 +V+TIR+IA+QT+ GE GRGF+VVA EVR LS V SI+EV ++ Sbjct: 189 TDIVRTIREIAAQTNLLALNAAIEAARAGEHGRGFNVVATEVRNLSNKVSLSITEVNNNI 248 Query: 248 KGITEEIGRMSTGMDQVQGTVEESQRQIEVALREFTEIAASAQQLDNQAREVLDII 303 +GI + I +ST + ++ V++S Q+E +REF ++A SA L+ QA+ L ++ Sbjct: 249 EGIVKRIDDVSTSIGRISHKVKDSSGQLEQTVREFEKLADSAATLEQQAKTFLRMV 304 >B1YGL8.1 B1YGL8_EXIS2 Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Length = 302 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 191/295 (64%) Query: 9 VTDALVVKALEKNLALIRFTLDRRVAYVNEVFASTMKYRSEDMYGMQHRDFCFPAFANSP 68 VTD V++A+E+NLA+IRF R+VAYVNE+FA TM Y +++ G HRD CFP FA+SP Sbjct: 8 VTDTQVIRAIEQNLAIIRFDDRRKVAYVNELFARTMGYEVDELIGRYHRDLCFPGFADSP 67 Query: 69 DYEIFWQDLLAGKSFQDKIERMDSEGGSVWLEATYMPIFDEADKQIIGVTKVATNITNRQ 128 YE+FW+ L+ G ++QDKIER ++G WLEATYMPIF E ++++GV+K+AT+IT RQ Sbjct: 68 AYELFWRKLMQGITYQDKIERRSADGQQKWLEATYMPIFSEDGRRVVGVSKIATDITVRQ 127 Query: 129 TNMSNLVERMQQMADSLNQRAEQGIGRSRELLLSIDKIAGVSSENSLTLANLQSKAGDIQ 188 ++ + + + + L ++E G +L ++ ++ S+ N L LQ++ I Sbjct: 128 QDVLRMADELNATSAFLTVKSESGRQDGLHVLATVQQVEAESTANLANLVQLQAQTDSIT 187 Query: 189 GVVQTIRDIASQTHXXXXXXXXXXXXXGEFGRGFDVVAKEVRKLSAMVQDSISEVRESVK 248 +V TIRDIA+QT+ GE GRGF+VVA EVR LS V SI E++E+++ Sbjct: 188 DIVTTIRDIAAQTNLLALNAAIEAARAGEHGRGFNVVATEVRNLSNKVSLSIGEIKENIE 247 Query: 249 GITEEIGRMSTGMDQVQGTVEESQRQIEVALREFTEIAASAQQLDNQAREVLDII 303 GI + I +ST ++ + V+ S Q+E +REF +A SA+QL+ QA+E + ++ Sbjct: 248 GIVQRIEEVSTSIEHISLKVKTSSGQLEQTVREFDLLADSAKQLEQQAKEFVRVL 302 >A0AJF3.1 A0AJF3_LISW6 Complete genome Length = 300 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 187/294 (63%), Gaps = 2/294 (0%) Query: 3 NVLAQEVTDALVVKALEKNLALIRFTLDRRVAYVNEVFASTMKYRSEDMYGMQHRDFCFP 62 NV A + L++ L +N+A++RF ++++V YVN +FA M Y E+M + H D CFP Sbjct: 2 NVYADKEDATLLLDGLLQNVAIMRFDINKKVTYVNALFAEAMGYTEEEMLELSHPDLCFP 61 Query: 63 AFANSPDYEIFWQDLLAGKSFQDKIERMDSEGGSVWLEATYMPIFDEADKQIIGVTKVAT 122 F + Y+ W +LLAG+ FQ+KIER ++ G VW EATY+PIF E +IGV K+AT Sbjct: 62 DFVQTATYKEMWTNLLAGQKFQNKIERKNARGERVWFEATYIPIFLE--NTVIGVAKIAT 119 Query: 123 NITNRQTNMSNLVERMQQMADSLNQRAEQGIGRSRELLLSIDKIAGVSSENSLTLANLQS 182 +IT R+ + + ++ MA +L + + G RS LL + I S+EN++TL +LQ+ Sbjct: 120 DITRREETVHDFASGLKNMATNLKEHSSVGKTRSEALLNLVKSITKESNENTVTLHDLQT 179 Query: 183 KAGDIQGVVQTIRDIASQTHXXXXXXXXXXXXXGEFGRGFDVVAKEVRKLSAMVQDSISE 242 +A +I G++ TI IASQT+ G+ GRGF VVA+EVRKLS+ V+++I E Sbjct: 180 EAQNIHGIINTINGIASQTNLLALNAAIEAARAGDAGRGFSVVAEEVRKLSSRVEEAIKE 239 Query: 243 VRESVKGITEEIGRMSTGMDQVQGTVEESQRQIEVALREFTEIAASAQQLDNQA 296 V +SV GIT+EI +S+G ++V+ VEESQ + ++L +F +I +++ LD A Sbjct: 240 VEKSVNGITQEINTISSGTERVEAKVEESQEVLILSLEDFNQIESASTALDQNA 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.130 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,417,467,216 Number of extensions: 51864038 Number of successful extensions: 236368 Number of sequences better than 1.0e-05: 6404 Number of HSP's gapped: 234636 Number of HSP's successfully gapped: 6751 Length of query: 303 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 168 Effective length of database: 1,788,859,178 Effective search space: 300528341904 Effective search space used: 300528341904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)