BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0070.p (652 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B8M9.1 Q2B8M9_9BACI S-layer protein / Peptidoglycan endo-beta-... 112 1e-22 B1D939.1 B1D939_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 111 2e-22 Q53I45.1 Q53I45_9BACL Xylanase XynA GH 10 (Fragment) 111 2e-22 B8I1D2.1 B8I1D2_CLOCE S-layer domain protein 108 2e-21 Q9ZA17.1 Q9ZA17_9FIRM S-layer associated multidomain endoglucanase 102 1e-19 >Q2B8M9.1 Q2B8M9_9BACI S-layer protein / Peptidoglycan endo-beta-N-acetylglucosaminidase Length = 473 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 6/169 (3%) Query: 31 FSDINNSY-AKEAILELLDKGIISGIGDNRFDPAGQLKRQDFAVILAKALSLDTTTVPSV 89 F D+ ++Y AK+AI +L+DKG+I G D F PA ++ R +FA +A+AL+L + Sbjct: 39 FKDVPSTYYAKDAITQLVDKGVIKGYADGTFRPANKVNRAEFAAFVARALNLPAAS---- 94 Query: 90 PTFTDVPKNSYAYNAVEAVYQAGWINGPGNGRFAAGSPLSRQDMIVIFVRALGIEAS-DK 148 F DVPK++ Y+ V Y+AG I G +G+F + ++RQDM V+ RA+ ++ S K Sbjct: 95 SNFKDVPKSAALYDGVSRAYKAGIIKGFADGKFKPSTSVTRQDMAVMLDRAMQVKGSYTK 154 Query: 149 SSFLPFADSAKIADYAKASVAAALEYGLIQGEGGNLFNPAANADRQSVA 197 + L F+D++KI YA+ SV YG++ G F P R A Sbjct: 155 TKSLNFSDASKIGPYARTSVQRVYNYGVMGAYSGTKFEPITIGTRAETA 203 >B1D939.1 B1D939_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 Length = 1462 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 94/173 (54%), Gaps = 4/173 (2%) Query: 38 YAKEAILELLDKGIISGIGDNRFDPAGQLKRQDFAVILAKALSLDTTTVPSVPTFTDVPK 97 +AKEAI + +G+I G G+N F PA +KR DF +L +AL L T F+DVP Sbjct: 1291 WAKEAIDAMASRGVIKGTGENTFSPAASIKRADFIALLVRALELHGTGTTDTAMFSDVPA 1350 Query: 98 NSYAYNAVEAVYQAGWINGPGNGRFAAGSPLSRQDMIVIFVRA---LGIEASDKSSFLPF 154 N+Y YN + Q G G + F S +SRQDM+V+ RA LG + S F Sbjct: 1351 NAYYYNELAVAKQLGIATGFEDNTFKPDSSISRQDMMVLTTRALAVLGKQLPAGGSLNAF 1410 Query: 155 ADSAKIADYAKASVAAALEYGLIQGEGGNLFNPAANADRQSVALVASKFIKVK 207 +D+A +A YA+ SVAA ++ G++QG G L P R A++ + K++ Sbjct: 1411 SDAASVAGYAQDSVAALVKAGVVQGSGSKLA-PNDQLTRAEAAVILYRIWKLQ 1462 >Q53I45.1 Q53I45_9BACL Xylanase XynA GH 10 (Fragment) Length = 1467 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 94/173 (54%), Gaps = 4/173 (2%) Query: 38 YAKEAILELLDKGIISGIGDNRFDPAGQLKRQDFAVILAKALSLDTTTVPSVPTFTDVPK 97 +AKEAI + +G+I G G+N F PA +KR DF +L +AL L T F+DVP Sbjct: 1296 WAKEAIDAMASRGVIKGTGENTFSPAASIKRADFIALLVRALELHGTGTTDTAMFSDVPA 1355 Query: 98 NSYAYNAVEAVYQAGWINGPGNGRFAAGSPLSRQDMIVIFVRA---LGIEASDKSSFLPF 154 N+Y YN + Q G G + F S +SRQDM+V+ RA LG + S F Sbjct: 1356 NAYYYNELAVAKQLGIATGFEDNTFKPDSSISRQDMMVLTTRALAVLGKQLPAGGSLNAF 1415 Query: 155 ADSAKIADYAKASVAAALEYGLIQGEGGNLFNPAANADRQSVALVASKFIKVK 207 +D+A +A YA+ SVAA ++ G++QG G L P R A++ + K++ Sbjct: 1416 SDAASVAGYAQDSVAALVKAGVVQGSGSKLA-PNDQLTRAEAAVILYRIWKLQ 1467 >B8I1D2.1 B8I1D2_CLOCE S-layer domain protein Length = 594 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 8/185 (4%) Query: 32 SDINNS--YAKEAILELLDKGIISGIGDNRFDPAGQLKRQDFAVILAKALSLDTTTVPSV 89 SD++ S YA EAI + + IISG F+P + R + +L KAL +DT +PS Sbjct: 35 SDLSKSSVYASEAIQWMANNSIISGDNQGNFNPRQSITRAELITLLVKALDIDTENLPST 94 Query: 90 PTFTDVPKNSYAYNAVEAVYQAGWINGPGNGRFAAGSPLSRQDMIVIFVRALGIEA---- 145 TF+DVP + +A+ VEA +AG +G G+G+F S +R+ + + + L + Sbjct: 95 ATFSDVPVSHWAFKYVEAANRAGITSGTGSGKFGINSLTTREQVTTMLLNYLCVSKEAIV 154 Query: 146 --SDKSSFLPFADSAKIADYAKASVAAALEYGLIQGEGGNLFNPAANADRQSVALVASKF 203 L F D+ K++D+AKAS+ A+ ++ G + F+P+ A ++ +A++ KF Sbjct: 155 AEQGLDDLLKFKDAGKMSDWAKASIKFAVSNNIMSGVSADSFSPSGKATKEQIAVILYKF 214 Query: 204 IKVKE 208 + KE Sbjct: 215 VNSKE 219 >Q9ZA17.1 Q9ZA17_9FIRM S-layer associated multidomain endoglucanase Length = 1097 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 9/181 (4%) Query: 31 FSDINNSYAKEAILELLDKGIISGIGDNRFDPAGQLKRQDFAVILAKALSLDTTTVPSVP 90 F+DI++S+AK I L K IISG D F P ++ R +F +L KAL + ++P VP Sbjct: 913 FTDISSSWAKNEIQVLASKNIISGYPDGTFKPDKRITRAEFVSMLVKALGI-KQSIPDVP 971 Query: 91 TFTDVPKNSYAYNAVEAVYQAGWINGPGNGRFAAGSPLSRQDMIVIFVRALGIEASDK-- 148 TF+DV K + Y VEA G +G G +F ++RQ+M+V+ V AL + +K Sbjct: 972 TFSDVNKGDWYYGLVEAAKSTGIASGYGK-QFKPDMQITRQEMMVMVVNALRVNKVEKFV 1030 Query: 149 -----SSFLPFADSAKIADYAKASVAAALEYGLIQGEGGNLFNPAANADRQSVALVASKF 203 S F D K+ ++AK ++A + GLI+G G +P A R A V + Sbjct: 1031 SKGDVSVLGKFKDGGKVQNWAKDAMAIGVSNGLIKGTGDEYLSPDGRATRAQAAAVIYRM 1090 Query: 204 I 204 + Sbjct: 1091 L 1091 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.129 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,390,556,711 Number of extensions: 141468573 Number of successful extensions: 299366 Number of sequences better than 1.0e-05: 910 Number of HSP's gapped: 298723 Number of HSP's successfully gapped: 1006 Length of query: 652 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 510 Effective length of database: 1,722,912,073 Effective search space: 878685157230 Effective search space used: 878685157230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 135 (56.6 bits)