BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0061.p (376 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG10.1 B3KG10_9BACI Chaperone protein dnaJ 585 e-165 Q2B2B5.1 Q2B2B5_9BACI Chaperone protein dnaJ 474 e-132 Q9LCQ4.1 DNAJ_BRECH Chaperone protein dnaJ 463 e-128 A6CQZ8.1 A6CQZ8_9BACI Chaperone protein dnaJ 462 e-128 C0ZB49.1 DNAJ_BREBN Chaperone protein dnaJ 460 e-127 >B3KG10.1 B3KG10_9BACI Chaperone protein dnaJ Length = 372 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 286/373 (76%), Positives = 312/373 (83%), Gaps = 1/373 (0%) Query: 4 VAEKRDYYEILGLSRNASDDEVKKAYRKLARQYHPDVNKASDAEEKFKEVKEAYDVLSDG 63 +A+KRDYYE+LG+ ++ASDDE+KKAYRK+ARQYHPDVNKA+DAE KFKEVKEAYDVLSDG Sbjct: 1 MADKRDYYEVLGVGKDASDDEIKKAYRKMARQYHPDVNKAADAEAKFKEVKEAYDVLSDG 60 Query: 64 QQRARYDQYGHIDPNQXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDPNAPQRGGDLQYTM 123 Q+RARYDQYGHIDPNQ RRDPNAPQRG DLQYTM Sbjct: 61 QKRARYDQYGHIDPNQGMGGGGFSGDFGGFGDIFDMFFGGNG-RRDPNAPQRGNDLQYTM 119 Query: 124 TIEFKEAVFGKETDITIPRTETCDTCFGSGAKPGTKPETCSVCHGSGQQEFVQNTPLGQM 183 T+EFKEAVFGKETDITIPRTETCDTC GSGAKPGT+P TCSVC+GSGQQE VQNTP G+M Sbjct: 120 TVEFKEAVFGKETDITIPRTETCDTCHGSGAKPGTQPHTCSVCNGSGQQEVVQNTPFGRM 179 Query: 184 RNRRPCSHCSGTGKIIKEKCSTCGGQGKVKKQRKIHVRIPAGVDDGAQLRMXXXXXXXXX 243 NRR CS+C+GTGKIIK++CSTC G GKVKKQRKIHVR+PAGVDDGAQLRM Sbjct: 180 VNRRACSNCNGTGKIIKDRCSTCNGNGKVKKQRKIHVRVPAGVDDGAQLRMTGEGEGGFR 239 Query: 244 XXXXXDLYIVIRVKSHDFFVRENDDIMCEVPLTFAQAALGDEIEIPTLTEKVKLKIPAGT 303 DLYIVIRVK HDFF RE DDI CEVPLTFAQAALGDEIEIPTLTEKVKLKIPAGT Sbjct: 240 GGPAGDLYIVIRVKPHDFFEREGDDIYCEVPLTFAQAALGDEIEIPTLTEKVKLKIPAGT 299 Query: 304 QTGTFFRLKGKGVPHLRGSGTGDQHVRVIVVTPSKLSEEQKDLLRQFASYDGENTHEQEQ 363 QTGTFFRLKGKGVP LRG G GDQHV+V+V+TPSKLS+EQK+LLRQFAS DGE THEQEQ Sbjct: 300 QTGTFFRLKGKGVPRLRGMGQGDQHVKVVVITPSKLSDEQKELLRQFASLDGEQTHEQEQ 359 Query: 364 SFFDRMKRAFRGD 376 SFFDR+K+AFRGD Sbjct: 360 SFFDRVKKAFRGD 372 >Q2B2B5.1 Q2B2B5_9BACI Chaperone protein dnaJ Length = 373 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/371 (61%), Positives = 281/371 (75%), Gaps = 1/371 (0%) Query: 7 KRDYYEILGLSRNASDDEVKKAYRKLARQYHPDVNKASDAEEKFKEVKEAYDVLSDGQQR 66 KRDYYE+LG+S++AS DE+KK+YRKL+++YHPD+NK +DA+EKFKEVKEAY+VLSD Q+R Sbjct: 3 KRDYYEVLGVSKSASKDEIKKSYRKLSKKYHPDINKEADADEKFKEVKEAYEVLSDDQKR 62 Query: 67 ARYDQYGHIDPNQXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDPNAPQRGGDLQYTMTIE 126 A YDQ+GH DPNQ R+DPNAP++G DLQYTM++ Sbjct: 63 AHYDQFGHTDPNQGFGGGDFGGGFGGFEDIFSTFFGGGGRRKDPNAPRQGADLQYTMSLS 122 Query: 127 FKEAVFGKETDITIPRTETCDTCFGSGAKPGTKPETCSVCHGSGQQEFVQNTPLGQMRNR 186 F+EAVFGKETDI IPR ETC+TC GSGAKPGTKPETC CHGSGQ QNTP G++ NR Sbjct: 123 FEEAVFGKETDIEIPREETCETCDGSGAKPGTKPETCRHCHGSGQLNVEQNTPFGKIVNR 182 Query: 187 RPCSHCSGTGKIIKEKCSTCGGQGKVKKQRKIHVRIPAGVDDGAQLRMXXXXXXXXXXXX 246 R C +CSGTGK IKEKC TCGG GKV K++KIHV+IPAG+DDG QLR+ Sbjct: 183 RVCQYCSGTGKEIKEKCQTCGGTGKVTKRKKIHVKIPAGIDDGQQLRVTGQGEPGINGGP 242 Query: 247 XXDLYIVIRVKSHDFFVRENDDIMCEVPLTFAQAALGDEIEIPTLTEKVKLKIPAGTQTG 306 DLY+V V+ H+FF RE DDI CE+P+TF QAALGDEIE+PTL KVKLK+PAGTQTG Sbjct: 243 PGDLYVVFHVRGHEFFEREADDIYCEMPITFVQAALGDEIEVPTLHGKVKLKVPAGTQTG 302 Query: 307 TFFRLKGKGVPHLRGSGTGDQHVRVIVVTPSKLSEEQKDLLRQFASYDGENTH-EQEQSF 365 T FRLKGKGVP++RG G GDQH+ V +VTP+KL+E+QK LL++F G+ EQE+SF Sbjct: 303 TRFRLKGKGVPNVRGYGNGDQHILVRIVTPTKLTEKQKQLLQEFGEVSGQVPQGEQEESF 362 Query: 366 FDRMKRAFRGD 376 F ++KRAF+G+ Sbjct: 363 FAKVKRAFKGE 373 >Q9LCQ4.1 DNAJ_BRECH Chaperone protein dnaJ Length = 375 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/374 (60%), Positives = 279/374 (74%), Gaps = 4/374 (1%) Query: 7 KRDYYEILGLSRNASDDEVKKAYRKLARQYHPDVNKASDAEEKFKEVKEAYDVLSDGQQR 66 KRDYYE+LG+ + A DE+KKAYRKLARQYHPDVNKA+DAEEKFKEVKEAYDVLS+ Q+R Sbjct: 2 KRDYYEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEEKFKEVKEAYDVLSEPQKR 61 Query: 67 ARYDQYGHIDPNQXXXXXXXXXXXXXXXXXXXXXXXXXXXRR-DPNAPQRGGDLQYTMTI 125 A+YD++GH DPNQ RR +PNAP++G DLQ+ ++I Sbjct: 62 AQYDRFGHQDPNQGFGGGGFDASGMGGFGDIFDMFFGGGGRRANPNAPRKGSDLQFGLSI 121 Query: 126 EFKEAVFGKETDITIPRTETCDTCFGSGAKPGTKPETCSVCHGSGQQEFVQNTPLGQMRN 185 EF E VFGKETD+ IP+ CDTC GSGAKPGT ETC C G+GQQE NTP G++ N Sbjct: 122 EFTETVFGKETDVEIPKEAECDTCHGSGAKPGTGVETCKTCSGTGQQEVAANTPFGRIVN 181 Query: 186 RRPCSHCSGTGKIIKEKCSTCGGQGKVKKQRKIHVRIPAGVDDGAQLRMXXXXXXXXXXX 245 RR C+ C G GK+ KEKCS+C G G+VK +RKIH+ IPAGVDDGAQLR+ Sbjct: 182 RRVCTTCEGKGKVFKEKCSSCRGSGRVKVRRKIHLNIPAGVDDGAQLRVTGEGEPGVNGG 241 Query: 246 XXXDLYIVIRVKSHDFFVRENDDIMCEVPLTFAQAALGDEIEIPTLTEKVKLKIPAGTQT 305 DLY+V+RVKSH+FF RE +DI CEVPLT+AQAALGDEIE+PT+ +VKLKIP+GTQT Sbjct: 242 PPGDLYVVLRVKSHEFFEREGNDIYCEVPLTYAQAALGDEIEVPTVDGRVKLKIPSGTQT 301 Query: 306 GTFFRLKGKGVPHLRGSGTGDQHVRVIVVTPSKLSEEQKDLLRQFASYDGENTHE---QE 362 TFFRL+GKGVPHLRG+G GDQHV+V V+TP+KLS++QK+LLR+ A GE + ++ Sbjct: 302 ETFFRLRGKGVPHLRGNGRGDQHVKVRVITPTKLSDKQKELLRELAELSGEKPGQHGGED 361 Query: 363 QSFFDRMKRAFRGD 376 + FF++MKRAFRG+ Sbjct: 362 EGFFEKMKRAFRGE 375 >A6CQZ8.1 A6CQZ8_9BACI Chaperone protein dnaJ Length = 374 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/372 (60%), Positives = 277/372 (74%), Gaps = 2/372 (0%) Query: 7 KRDYYEILGLSRNASDDEVKKAYRKLARQYHPDVNKASDAEEKFKEVKEAYDVLSDGQQR 66 KRDYYE+LG+ + AS DE+KKAYRKL+++YHPD+NK +DA EKFKE+ EAY+VLSD Q+R Sbjct: 3 KRDYYEVLGVEQGASKDEIKKAYRKLSKKYHPDINKEADANEKFKEISEAYEVLSDDQKR 62 Query: 67 ARYDQYGHIDPNQXXXXXXXXXXXXXXXXXXXXX--XXXXXXRRDPNAPQRGGDLQYTMT 124 A+YD++GH DPNQ RRDPNAP+ G DLQYTM+ Sbjct: 63 AQYDRFGHTDPNQGFGGGGDFGGGFGGFEDIFNTFFGGGGGRRRDPNAPRAGADLQYTMS 122 Query: 125 IEFKEAVFGKETDITIPRTETCDTCFGSGAKPGTKPETCSVCHGSGQQEFVQNTPLGQMR 184 + F+EAVFGKETDI IP+ E CDTC GSGAKPGTKPETC C GSGQ QNTP G++ Sbjct: 123 VTFEEAVFGKETDIEIPKEEECDTCDGSGAKPGTKPETCKHCQGSGQLNVEQNTPFGRIV 182 Query: 185 NRRPCSHCSGTGKIIKEKCSTCGGQGKVKKQRKIHVRIPAGVDDGAQLRMXXXXXXXXXX 244 NRR C HC GTGK IKEKC+TCGG GKV+K+RKIHV+IPAG+D+G QLR+ Sbjct: 183 NRRVCHHCHGTGKFIKEKCNTCGGNGKVQKRRKIHVKIPAGIDEGQQLRVTGQGEPGVNG 242 Query: 245 XXXXDLYIVIRVKSHDFFVRENDDIMCEVPLTFAQAALGDEIEIPTLTEKVKLKIPAGTQ 304 DLY+V V+ H+FF R+ DDI CE+P+TF Q+ALGDEIE+PT+ KVKLK+PAGTQ Sbjct: 243 GPPGDLYVVFHVRPHEFFERDGDDIYCEMPITFVQSALGDEIEVPTMHGKVKLKVPAGTQ 302 Query: 305 TGTFFRLKGKGVPHLRGSGTGDQHVRVIVVTPSKLSEEQKDLLRQFASYDGENTHEQEQS 364 TGT FRL+GKGVP++RG GTGDQH+ V VVTP+KL+E QK+LLR+F G+ T EQ +S Sbjct: 303 TGTKFRLRGKGVPNVRGYGTGDQHIHVKVVTPTKLTERQKELLREFGDITGQVTDEQHES 362 Query: 365 FFDRMKRAFRGD 376 FF ++KRAF+G+ Sbjct: 363 FFGKVKRAFKGE 374 >C0ZB49.1 DNAJ_BREBN Chaperone protein dnaJ Length = 375 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/374 (59%), Positives = 282/374 (75%), Gaps = 4/374 (1%) Query: 7 KRDYYEILGLSRNASDDEVKKAYRKLARQYHPDVNKASDAEEKFKEVKEAYDVLSDGQQR 66 KRD YE+LG++++A DE+KKAYRKLARQYHPDVNK +DAEEKFKEVK+AYD+LS+ Q+R Sbjct: 2 KRDLYEVLGVAKDADADEIKKAYRKLARQYHPDVNKEADAEEKFKEVKDAYDILSEPQKR 61 Query: 67 ARYDQYGHIDPNQXXXXXXXXXXXXXXXXXXXXXXXXXXXRR-DPNAPQRGGDLQYTMTI 125 A+YD++GH DPNQ RR +PNAP++G DLQ+ ++I Sbjct: 62 AQYDRFGHQDPNQGFGGGGFDGSGMGGFGDIFDMFFGGNGRRANPNAPRKGSDLQFGLSI 121 Query: 126 EFKEAVFGKETDITIPRTETCDTCFGSGAKPGTKPETCSVCHGSGQQEFVQNTPLGQMRN 185 +F +A+FGKETD+ IP+ CDTC GSGAKPG+ +TC C G+GQQE V NTP G++ N Sbjct: 122 DFIDAIFGKETDVEIPKEAECDTCLGSGAKPGSGVDTCKTCSGTGQQEVVANTPFGRIVN 181 Query: 186 RRPCSHCSGTGKIIKEKCSTCGGQGKVKKQRKIHVRIPAGVDDGAQLRMXXXXXXXXXXX 245 RR CS C G GK++KEKCSTC G G+VK +RKIH+ IPAGVDDGAQLR+ Sbjct: 182 RRVCSTCEGKGKVVKEKCSTCRGSGRVKVRRKIHLNIPAGVDDGAQLRVTGEGEPGANGG 241 Query: 246 XXXDLYIVIRVKSHDFFVRENDDIMCEVPLTFAQAALGDEIEIPTLTEKVKLKIPAGTQT 305 DLY+V+RVKSH+FF RE +DI CEVPLT+AQAALGDEIE+PT+ +VKLKIPAGTQT Sbjct: 242 PPGDLYVVLRVKSHEFFEREGNDIYCEVPLTYAQAALGDEIEVPTVDGRVKLKIPAGTQT 301 Query: 306 GTFFRLKGKGVPHLRGSGTGDQHVRVIVVTPSKLSEEQKDLLRQFASYDGENTHE---QE 362 TFFRL+GKGVPHLRG+G GDQHV+V V+TP+KLS++QK+LLR+ A GE + ++ Sbjct: 302 ETFFRLRGKGVPHLRGNGRGDQHVKVRVITPTKLSDKQKELLRELAELSGEKPGQHGGED 361 Query: 363 QSFFDRMKRAFRGD 376 + FF++MKRAFRG+ Sbjct: 362 EGFFEKMKRAFRGE 375 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,107,781,880 Number of extensions: 84681421 Number of successful extensions: 234338 Number of sequences better than 1.0e-05: 6676 Number of HSP's gapped: 215590 Number of HSP's successfully gapped: 9665 Length of query: 376 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 239 Effective length of database: 1,770,017,148 Effective search space: 423034098372 Effective search space used: 423034098372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)